end = TRUE, )
for the next chunk of rows, looping over chunks until done. Two chunks will
get your 2.8 billion entries done.
Best
Steve
Steven McKinney, Ph.D.
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
> -Original Message-
ght place to report this, for an update to the Sources page?
Steven McKinney
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
er to accomplish than maintaining
a library of rpms on the head node and managing the
distribution scripts to push out to the compute nodes.
Steven McKinney
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
> Here's my guess
>
> Fir
ff <- pmax(0, (dev[1L] - dev)/df)
Fs <- (diff/df)/(dev/(rdf - df))
Is this where the double division is happening?
diff has df in the denominator, then Fs assignment sees
diff divided by df again. if df is 1, the double division
will go unnoticed.
Steven McKinney
Statistician
ames.
> `
> from
> http://ess.r-project.org/Manual/ess.html#ESS_0028S_0029_002d_002dEditing-
> files
>
>
> ESS can do completion of functions, object names, and also
> list/data.frame elements in *both* the inferior R buffer as well as in
> the .R file.
&g
hat describes Radford's
outcome?
(It looks very lisp-like. Is it linked to R's origins in lisp?)
I get the same outcome in R-2.11.1 so it is nothing new. I can only hope I
have not
set up such an effect in analysis scripts I've used to generate rep
ting weights, it is not yet clear what n
should be, and this issue awaits further study. However,
it seems reasonable that if the model is based on an
assumption of simple random sampling but the sampling
design is less efficient, then n should be reduced to
reflect the efficiency of t
gt;
> First of the month is just as clean, and AFAIR they all have a first ;-)
>From which you can get the last...
> format(ISOdate(2012,1:12,1)-86400,"%d-%b-%Y")
[1] "31-Dec-2011" "31-Jan-2012" "29-Feb-2012" "31-Mar-2012" "30-Apr
> -Original Message-
> From: Simon Urbanek [mailto:simon.urba...@r-project.org]
> Sent: January-18-12 3:10 PM
> To: Steven McKinney
> Cc: R-devel@r-project.org
> Subject: Re: [Rd] png cairo device problems on Mac 10.6.8
>
>
> On Jan 18, 2012, at 5:2
latform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_2.14.1
>
Steven Mc
gt; read it on the help page years ago and furthermore, I think this is at
> least the second time where this particular formulation has been
> questioned on R-devel. I am not an index of R help pages, but I
> cannot recall seeing the 'L' as shorthand for logical. I
at how quickly bugs are fixed, feature
requests are implemented, and patched versions released by
this open source group (this includes Bioconductor and
many of the package maintainers).
No commercial vendor that I know of can or will match this
response.
Steven McKinney
Statistician
Molecular Onco
}
>
> This returns 5, invisibly. It's also bad style, according to those of
> us who prefer <- to = for assignment.
For maximum clarity
f0 <- function() {
b <- 5
return( list( a = b ) )
}
> f0()
$a
[1] 5
Steven McKinney
>
> > f2<- function(){
If you add the other package to Suggests, what problems do you see?
Adding the other package to Suggests seems most appropriate, your
use case seems very similar to packages discussed in a vignette.
Steven McKinney
From: r-devel-boun...@r-project.org [r
an R developer to do so in his copious spare time :)
Steven McKinney
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
From: r-devel-boun...@r-project.org [r-devel-boun...@r-project.org] On Behalf
Of David W
I think this is a question for R-devel so I'm
cross-posting there with apologies.
I've just acquired a Windows 7 64-bit box and
also will need RMySQL eventually.
Is there any information about issues involved
with compiling RMySQL for Windows 64-bit?
Steven McKinney
Statistician
> -Original Message-
> From: Benilton Carvalho [mailto:bcarv...@jhsph.edu]
> Sent: Thursday, November 19, 2009 6:59 PM
> To: Steven McKinney
> Cc: 'm...@celos.net'; 'r-de...@stat.math.ethz.ch'
> Subject: Re: [Rd] Surprising length() of POSIXlt vec
I've checked the archives, and this problem crops up every
few months going back for years.
What I was not able to find was an explanation of why a
function such as
length.POSIXlt <- function(x) { length(x$sec) }
is a Bad Idea, or what it would break. listserv threads
seem to end without pres
ist of corporation names from the
various R email listservs as well.
Press back with the reviewer. Reviewers can learn new things
and will respond to arguments with good evidence behind them.
Good luck!
Steven McKinney
From: r-devel-boun...@r-project
> -Original Message-
> From: r-devel-boun...@r-project.org [mailto:r-devel-boun...@r-
> project.org] On Behalf Of Arne Henningsen
> Sent: Tuesday, November 10, 2009 2:24 AM
> To: Duncan Murdoch; r-devel@r-project.org; Yves Croissant;
> giovanni_mi...@generali.com; Achim Zeileis
> Subject:
s around the negative number is the only way to keep
such an expression robustly safe given the various whitespace alterations
that happen as such text passes through different parsers, editors,
mailers, proportional pitch font displays (which can fool human readers) ...
( (
t(loadings(fa), digits = 5)
Loadings:
Factor1 Factor2 Factor3
v1 0.94384 0.18193 0.26661
v2 0.90472 0.23484 0.15948
v3 0.23564 0.20960 0.94634
v4 0.17998 0.24225 0.82757
v5 0.24211 0.88064 0.28560
v6 0.19277 0.95884 0.19621
Factor1 Factor2 Factor3
SS loadings1.89304 1.88576
Thanks Romain,
I find
index?survival
more intuitive than my proposed
?survival::
Steven McKinney
From: r-devel-boun...@r-project.org [r-devel-boun...@r-project.org] On Behalf
Of Romain Francois [romain.franc...@dbmail.com]
Sent: August 4, 2009 11
> -Original Message-
> From: Duncan Murdoch [mailto:murd...@stats.uwo.ca]
> Sent: Tuesday, August 04, 2009 5:06 PM
> To: Steven McKinney
> Cc: 'r-de...@stat.math.ethz.ch'; 'r-b...@r-project.org'
> Subject: Re: [Rd] Wishlist: Navigate to "Index&
> -Original Message-
> From: Duncan Murdoch [mailto:murd...@stats.uwo.ca]
> Sent: Tuesday, August 04, 2009 8:03 AM
> To: Steven McKinney
> Cc: r-de...@stat.math.ethz.ch; r-b...@r-project.org
> Subject: Re: [Rd] Wishlist: Navigate to "Index" page of help when no
ign new values for "x" in help1 inside
> help2 !
Is this a homework problem?
Some reading of
?environment
will help answer this.
>
> Thanks in advance
>
> Jörg Betzin
> -------
> Deutsches Zentrum für Altersfragen
> Manfr
been reported but the website
broke
> on
> me. appologies if the bug is known already)
>
> Best, Ludo
>
> Netherlands Cancer Institute
> Gene Regulation (B4)
> van Steensel Group
> Plesmanlaan 121
> 1066 CX Amsterdam
> The Netherlands
>
> Tel.: ++ 20
might crash
> > other much more important code; would you have any
> > proposals?
> >
> > Best,
> > Peter
> >
> > -------
> > Version:
> > platform = i386-pc-mingw32
> > arch = i386
I'd recommend either having two or three good examples
of acceptable posts at the end of the posting guide
or at least some hyperlinks to good examples. Two or
three contrasting poor posts would also be helpful.
If people can see a brief email with working code
AND the ever-essential sessionInfo(
e+01 3.00e+01 4.20e+01 4.32e+01
2.468571e+01 1.128824e-28 1.344243e-28 7.418009e-29 9.824087e-27
[11] 1.017082e-32 2.357175e-51 9.543887e-57 6.351670e-57
attr(,"class")
[1] "poly" "matrix"
Steven McKinney
-Original Message-
From: [EMAIL PROTEC
Hi all,
I compiled 64-bit R on an Apple Mac G5 running OS X, but it failed
make check. Simon Urbanek suggested I post results to R-devel.
> On Nov 6, 2007, at 10:23 PM, Steven McKinney wrote:
>
> > Hi Simon,
> >
> > Would you be able to give more guidance
day27
svn rev 42083
language R
version.string R version 2.5.1 (2007-06-27)
Steven McKinney
-Original Message-
From: [EMAIL PROTECTED] on behalf of Duncan Murdoch
Sent:
ionInfo()
R version 2.5.1 (2007-06-27)
powerpc-apple-darwin8.9.1
locale:
en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
attached base packages:
[1] "splines" "stats" "graphics" "grDevices" "utils" "datasets"
&q
ls" "datasets" "methods"
"base"
other attached packages:
lme4 Matrix lattice
"0.99875-0" "0.99875-1" "0.15-5"
-Original Message-
From: [EMAIL PROTECTED] on behalf of Steven McKinney
Sent: Thu 5/1
atment"
> model.matrix(~ A + A:B, df)
(Intercept) Aa Ax:Bb Aa:Bb
1 1 1 0 1
2 1 1 0 0
3 1 0 0 0
4 1 0 0 0
attr(,"assign")
[1] 0 1 2 2
attr(,"contrasts")
attr(,"contra
m[[i]]
if (is.null(pi))
pi <- pseq
for (j in 1:nvar) {
jj <- pi[j]
xij <- xi[[j]]
if (has.dim[jj]) {
value[[jj]][ri, ] <- xij
rownames(value[[jj]])[ri] <- rownames(xij)
}
else
b"
> rm
function (..., list = character(0), pos = -1, envir = as.environment(pos),
inherits = FALSE)
{
names <- sapply(match.call(expand.dots = FALSE)$..., as.character)
if (length(names) == 0)
names <- character(0)
list <- .Primitive("c")(list, nam
;s" "t" "u" "v" "w" "x" "y" "z"
> rm(c('a', 'b'))
> a
Error: object "a" not found
> b
Error: object "b" not found
> c
.Primitive("c")
> ls()
[1] "getMonog
4.0 (2006-10-03)
powerpc-apple-darwin8.7.0
locale:
en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
Steven McKinney
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
email: [EMAIL PROTECTED]
tel: 604-675-8000 x7561
BCCRC
Molecu
rg/view/00031305/di020553/02p0045u/0
Cheers
Steven McKinney
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
email: [EMAIL PROTECTED]
tel: 604-675-8000 x7561
BCCRC
Molecular Oncology
675 West 10th Ave, Floor 4
Vancouver B.C.
V5Z 1L3
Canada
essage-
From: [EMAIL PROTECTED] on behalf of Seth Falcon
Sent: Thu 10/12/2006 5:28 PM
To: r-devel@stat.math.ethz.ch
Subject: Re: [Rd] getMethods() not finding all methods
"Steven McKinney" <[EMAIL PROTECTED]> writes:
> Running R2.4.0 on Apple Mac OS X 10.4.8,
> in Emacs
nv""package:affy" "package:affyio"
"package:Biobase" "package:tools" "tools:RGUI"
[7] "package:methods" "package:stats" "package:graphics"
"package:grDevices" "package
If users post a bug or problem issue to an R-based news group
(R-devel, R-help, BioC - though BioC is far more forgiving)
they get yelled at for not reading the posting guide
and FAQ.
"Please *_do_* read the FAQ, the posting guide, ..."
the yellers do say. So I read the BioC FAQ and it says...
iting, I see the original
copy. But if I reinvoke the editor via fixInNamespace(),
I do see my modification.
Where is my copy residing? How do I push it out
to replace the exported copy?
Is this the proper way to modify a package function?
Are there other ways? I've searched webpages, R news
obalenv - the
bioclite() call appears to always call the package:utils
copy of this function.
Perhaps such modifications could be done by package:utils
developers?
Thanks to Herve Pages for his excellent
summarization of the issues arising when
running biocLite on the Mac.
Steven McKinney
St
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