ut under the model
you seem to be suggesting, preventing such behavior when you don't own
the environments in question is problematic.
Robert
>
> Duncan Murdoch
>
>>
>>> x <- 3
>>> e <- new.env()
>>> "x" %in% nam
Hi,
Peter Dalgaard wrote:
Prof. John C Nash wrote:
The responses to my posting yesterday seem to indicate more consensus
than I expected:
Umm, I had thought that it was well established that responders need
not represent the population being surveyed. I doubt that there is
consensus at th
not being handled over the the next few weeks.
Please let me know if you have problems, or suggested improvements.
Robert
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olves introducing some
artificial NA value (and consequently copying the matrix) outside the
range of tabulate's nbin argument.
Martin
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Robert Gentleman, PhD
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Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-
(easily) distinguish which of
the two calls to bar was active. There is no line counter or anything of that
sort available.
best wishes
Robert
> function call?
>
> Thanks!
>
> __
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> https://st
Hi,
I stripped the cc's as I believe that all read this list.
Romain Francois wrote:
> [moving this to r-devel]
>
> Robert Gentleman wrote:
>> Hi,
>>
>> Romain Francois wrote:
>>
>>> Duncan Murdoch wrote:
>>>
>>>> On 5
We are writing on behalf of the R Foundation, to clarify our position on
the licenses under which developers may distribute R packages.
Readers should also see FAQ 2.11: this message is not legal advice,
which we never offer. Readers should also be aware that besides
the R Foundation, R has many o
at
> will encapsulate all the possible scenarios so weneed to get experience
> until 2.9.0 is released. Please report any quirks to R-devel if they
> are completely reproducible (and preferably with the code change needed
> to fix them, since the chance of anyone else being able to repr
; Thanks,
>> Michael
>>
>> [[alternative HTML version deleted]]
>>
>> __
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>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>
>
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Pro
pened with any of the problems above. So I
move very, very slowly on them.
Duncan Murdoch
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Best,
Mathieu
* BTW, if this is relevant, I could try to do it.
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Fred Hu
Duncan Murdoch wrote:
> On 4/25/2008 10:16 AM, Robert Gentleman wrote:
>>
>> Duncan Murdoch wrote:
>>> Currently ?foo does help("foo"), which looks for a man page with
>>> alias foo. If foo happens to be a function call, it will do a bit
>>>
nt subsets of the docs
you have mentioned;
help?foo #only man pages
guides?foo #the manuals, R Extensions etc
and so on.
You did not, make a suggestion as to how we would get the equivalent
of ?foo now, if a decision to move were taken.
>
> Comments, please.
>
> Duncan Mu
n the DESCRIPTION file? If so, would you mind elaborating why?
Sure: The date of what?
>
> Hadley
>
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Robert Gentleman, PhD
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Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
PO Box 19024
Se
king (where comparing to the date the check
> is run is not too useful) ...
But definitely not a warning.
Robert
>
> Best
> -k
>
> __
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&g
t; }
>
> so I can create new "externalptr" instances from R with:
>
> .Call("xp_new")
>
> I understand that there is not much you can do from R with an "externalptr"
> instance and that you will have to manipulate them at the C level anyway.
> But since new("e
you have a
registration before making any travel plans. Also, this is definitely
not a course for beginners.
Best wishes
Robert
--
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2
wishes
Robert
>
> Thanks for any help,
> Terry Therneau
>
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Program in Computationa
work.
>>
>> Cheers,
>> H.
>>
>> __
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> -BEGIN PGP SIGNATURE-
> Version: GnuPG v1.4.7 (Darwin)
> Comment: Using GnuPG
o be vaguely worded in the help.
>
>> __
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>>
>
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;. To cite Bioconductor, see
>> 'citation("Biobase")' and for packages 'citation(pkgname)'.
>>
>> Loading required package: AnnotationDbi
>> Loading required package: DBI
>> Loading required package: RSQLite
>> An object of class "G
the post doc and should probably direct questions about the
bioinformatics position to Martin.
All applications must go through the FHCRC web site.
thanks
Robert
--
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research
>> [7] "methods" "base"
> >>
> >> other attached packages:
> >> lme4 Matrix rcompletionrcompgen latticediveMove
> >> "0.99875-2" "0.99875-2" "0.1-2""0.1-13&
name to something more scary than "source", e.g. "LaTeX/Noweb
> source".
I would very much prefer to keep the source, with some name, scary or
not...
>
> -Deepayan
>
> __
> R-devel@r-project.org mailing list
>
ned(Win32) )
> R_ProcessEvents();
> #else
> +R_PolledEvents();
> if (R_interrupts_pending)
> onintr();
> #endif /* Win32 */
>
> __
> R-devel@r-project.org mailing
heel
> happening in every package that needs such quantiles in its C code.
>
> Biobase is in quite active maintenance, and I'd assume its
> maintainers will remove rowMedians() from there (or first
> replace it with a wrapper in order to deal with the namespace
> issue you mentioned) as soon as R has
where namespaces are essential).
best wishes
Robert
>
> The tradeoff is false because unit tests are a better way to assure safety.
> If the major packages (like stats) had a suite of tests, a package developer
> could load his own package, run all the unit tests, and see
umns, or either or both - and why a special name?)
best wishes
Robert
--
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
PO Box 19024
Seattle, Washington 98109-1024
et us there? Certainly
cleaning up the names via
cleanTick = function(x) gsub("`", "", x)
works, but it seems a bit ugly, and it might be better if the modeling
code was modified.
best wishes
--
Robert Gentleman, PhD
Program in Computational Biology
Division of
es, subset, na.action))
> Browse[1]>
> Erreur dans model.frame(formula, rownames, variables, varnames, extras,
> extranames, :
> type (closure) incorrect pour la variable '(weights)'
>
> I couldn't go further because of the .Internal. I tried to googlise
Many of the suggestions above would improve R, but they're unlikely to
>> happen unless someone volunteers to do them. I'd suggest picking
>> whichever one of these or some other list that you think is the highest
>> priority, and post a specific proposal to this list about how to do it.
>>
found <- found[sapply(found, function(x) {
>>> exists(x, where = i, mode = mode, inherits = FALSE)
>>> })]
>>> }
>>> numFound <- length(found)
>>> x <- c(x, if (where)
>>>
vironment with
> new.env(), but how can I assign and retrieve values based on a
> numerical index (the derivative)? The example of the help page of
> assign explicitly shows that assign("a[1]") does not work for this
> purpose.
>
> Thanks,
>
> Tamas
>
>
s (getAnywhere
> doesn't work).
>
> Tamas
>
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Robert Gentleman wrote:
> Hi,
>We had the "names" discussion and, AFAIR, the idea that someone might
> misinterpret the output as suggesting that one could index by number,
> seemed to kill it. A more reasonable argument against is that names<- is
> p
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>
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Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Resea
f[2,] ## still internally produces the character(1e6) row names!
>
> something I think we should eliminate as well,
> i.e., at least make sure that only seq_len(1e6) is internally
> produced and not the character vector.
>
> Note however that some of these changes are backward
&
in the S4 system are likely to make lazy evaluation a thing of the past
since it is pretty hard to dispatch on class without knowing what the
class is. That means, that as we move to more S4 methods/dispatch we
will be doing more evaluation of arguments.
best wishes
Robert
> Ch
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>
> __
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>
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Robert Gentl
gt; Or even
>> m[j=2,i=]
> [1] 2 4
>
> However, what would the argument names be in the >2-dim case? i, j are
> used only in help("[") and that page is quite specific about
> explaining that named matching doesn't work.
>
--
Robert Gentleman,
function(a = a) 1
a bug for sure
> I would have expected to get "function(a = foo) 1".
>
> Duncan Murdoch
>
> __
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>
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Robert G
the package maintainer as well. You can use find("functionname")
> and packageDescription("packagename") to find this information.
> Only send such questions to one of R-help or R-devel. This applies to both
> requests for help and to bug reports.
>
> ______
> R-help@s
I was thinking that one of the main advatnages of the new S4 type was
>> to get away from this sort of accidental dispatch. Not trying to be
>> snide, but what is useful about getting a zero for length(foo)? The
>> main use I can think of is in trying to identify S4 instances, but
rev38710
>> language R
>> version.string R version 2.4.0 Under development (unstable)
>> (2006-07-28 r38710)
>>
>> url:www.econ.uiuc.edu/~roger Roger Koenker
>> email [EMAIL PROTECTED] Department of Economics
>> vox:
should appear at an R-devel near you...
thanks Seth
Seth Falcon wrote:
> Robert Gentleman <[EMAIL PROTECTED]> writes:
>> OK, that suggests setting at the options level would solve both of your
>> problems and that seems like the best approach. I don't really want to
t; On 7/28/06, Robert Gentleman <[EMAIL PROTECTED]> wrote:
>> I wonder if it would not be better to make the user agent string
>> something that is configurable (at the time R is built) rather than at
>> run time. This would make Seth's patch about 1% as long. Or this could
&
Prof Brian Ripley wrote:
> On Fri, 28 Jul 2006, Robert Gentleman wrote:
>
>> I wonder if it would not be better to make the user agent string
>> something that is configurable (at the time R is built) rather than at
>> run time. This would make Seth's patch ab
s made in R via download.file. If there is interest, I
>> will polish it.
>
> It looks right, but I am running under Windows without a compiler.
>
--
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1
he message?), if not print
a standard message (just as .Deprecated does) and then continue with the
search using the other file extensions.
Defunct could be handled similarly.
Comments, alternative suggestions?
thanks
Robert
--
Robert Gentleman, PhD
Program in Computational Biolog
gt; to start deploying an R-forge project hosting service "eventually"
> (hopefully, we can set things up during the summer). This should
> provide us with an ideal infrastructure for sharing developer resources,
> in particular as we could add QC testing et al to the standard c
Thu, 20 Apr 2006, Robert Gentleman wrote:
>
>
>>I disagree, things like README files and other objects are important and
>>should be included. I don't see the real advantage to such warnings, if
>>someone wants them they could be turned on optionally.
>
>
to be able to build exactly what I check out from
>>my source code repository without having to copy files in and out.
>
>
> All described in TFM, including how to set defaults for what is checked.
>
>
>>The output from R CMD check is below. Any insight would be appreci
;> Seth> uses S4 classes from another package with a namespace, one
>> Seth> must import the classes and *also* export them?
>>
>> Seth> Now I see this:
>>
>> Seth> ** preparing package for lazy loading
>> Seth> Error in getClass(&qu
> platform i386-pc-mingw32
> arch i386
> os mingw32
> system i386, mingw32
> status
> major2
> minor2.1
> year 2005
> month 12
> day 20
> svn rev 36812
> language R
>
> __
> R-devel@r-p
ument"), "replace");
> +replace = asLogical(sreplace);
> if (replace == NA_LOGICAL)
> errorcall(call, _("invalid '%s' argument"), "replace");
> if (n == NA_INTEGER || n < 1)
>
> __
> R-devel
folks I have asked have said they want the lib.loc parameter to be
used for other loading.
Comments?
Robert
--
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
PO Box 19024
Seattle
same version of multtest loads fine :
>
>
>>library(multtest)
>
> Loading required package: survival
> Loading required package: splines
>
>
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by anyone wanting to use both
As I said above, and will try to emphasize, I really do not want R CMD
check to do any checking of Uses (unless asked to do so). Developers
that use Uses need to make sure that their package works and passes R
CMD check whether the package is there or not.
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