[Rd] Signature specific S4 Method export in NAMESPACE file would be cool

r package. I'm eager to hear about your thoughts. Thanks in advance for your time. Markus Müller __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Which functions are there to parse a NAMESPACE file (without installing the package)

Cool It works ;-) Thanks a lot. 2014/1/21 Peter Meilstrup > Try the function parseNamespaceFile in base. Not documented but its > output should be understandable. > > Peter > > On Tue, Jan 21, 2014 at 5:41 AM, Markus Müller > wrote: > > For the purpose of automat

[Rd] Which functions are there to parse a NAMESPACE file (without installing the package)

source those parsers should be certainly there) I just don't know where to look for them. Thanks in advance Markus [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Why do methods of "initialize" have no "srcref" attribute as other S4 mehtods?

Thank You very much. This is a great help. I would never ever have thought of either unRematchDefinition or getSrcref. I will incorporate this new insight and report about any further discoveries (or problems leading to them ;-)) Thanks again Markus 2014/1/8 Duncan Murdoch > On 14-01-07 2

[Rd] Why do methods of "initialize" have no "srcref" attribute as other S4 mehtods?

setMethod( + f="initialize", + signature="MyClass", + definition=function # here are also comments but we can not retrieve them + (.Object,value){ + .Object@val<- value + return(.Object) + } + ) [1] "initialize" > > attr(getMethod("initialize","MyClass"),"srcref") NULL Is there a reason for this behavior, and more important still, Ist there a way to get at the source of my constructors to document them automatically? Thanks in advance Markus [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] multicore mclapply hangs

Hello Rune, please use the mailinglist 'R-sig-hpc' (https://stat.ethz.ch/mailman/listinfo/r-sig-hpc, do not forget to register!) for this topic. And please provide some more information: * in R: sessionInfo() * and your used operation system Best Markus Rune Schjellerup Philos

Re: [Rd] Building a package with BLAS under Windows

Solved it myself: The single precision and complex BLAS routines were not installed. -- View this message in context: http://www.nabble.com/Building-a-package-with-BLAS-under-Windows-tp24590763p24633850.html Sent from the R devel mailing list archive at Nabble.com. _

Re: [Rd] matrix algebra in c

> 1. use F77_CALL() to call matrix multiplication functions from blas. > This should be ok as long as I remember that c and FORTRAN store > matrices differently. Concerning 1. you might want to look at some C++ wrapper for BLAS and Lapack like http://flens.sourceforge.net, this makes things easie

[Rd] Building a package with BLAS under Windows

pp:(.text+0x32a): undefined reference to `caxpy_' cvm_arrays.o:cvm_arrays.cpp:(.text+0x421): undefined reference to `saxpy_' ... To me it looks like somehow the BLAS routines are not called correctly under Windows. I would be very grateful if anybody could help me. Thanks a lot, Markus.

[Rd] Dynamic Library linked with Parallel Intel MKL

only uses one core). Is there some trick? Do I need to link the whole of R with parallel MKL? Thanks a lot, Markus. -- View this message in context: http://www.nabble.com/Dynamic-Library-linked-with-Parallel-Intel-MKL-tp24053462p24053462.html Sent from the R devel mailing list archive at

Re: [Rd] experinental revision of the 'snow' package

he Rd list. Giuseppe confirmed, that DeinoMPI & Rmpi & the new version of snow is working very well. See you in Seattle at the BioC2008 or Developer Day? I will fly to Seattle tomorrow. Best regards Markus > library(Rmpi) > library(snow) > c1<-makeCluster(3) 3 slav

Re: [Rd] Snow or alternative MPI packages on Windows

Hello, we are using Rmpi and snow on windows. It is working very well. We are using Windows Server 2003 and *MPICH2. I probably will manage to have some tests with the new snow (*snow_0.3-3)* version this week. Best Markus Martin Morgan schrieb: [EMAIL PROTECTED] writes: Guys, I&#

Re: [Rd] experinental revision of the 'snow' package

form Munich Markus Luke Tierney schrieb: A new version of the 'snow' package for parallel computing in R is available at http://www.stat.uiowa.edu/~luke/R/cluster/snow_0.3-3.tar.gz This substantially revises the way in which worker processes are started to allow snow to be used

[Rd] Rmpi 0.5-6 : error spawning process

file("Rslaves.sh", package = "Rmpi"), slavearg = arg, nslaves = nslaves, info = 0, root = root, intercomm = intercomm) 1: mpi.spawn.Rslaves(nslaves = 5) There are no logfiles! What was changed in the new version? Best Markus -- Dipl.-Tech. Math. Markus Schmi

[Rd] Namespace and function open

} How I have to change my NAMESPACE file to fix this problem? Thanks Markus Schmidberger * __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] R_alloc segfaults

loc, I get the segfault a little later when it calls S_alloc. So I'd like to fix the R_alloc/S_alloc problem, rather than modifying the whole optim.c code. Any hints how I can fix the R_alloc calls and avoid the segmentation faults? Thanks! Markus _

[Rd] snow, mpi.isend

quot;Rmpi, mpi.irecv.Robj") (I have some problems with the mailinglist. I all the time got back the message: "Message rejected by filter rule match") Best Markus Schmidberger -- Dipl.-Tech. Math. Markus Schmidberger Ludwig-Maximilians-Universität München IBE - Institut für medizini

[Rd] Rmpi, mpi.irecv.Robj

Hello, in the package "Rmpi" (Version 0.5-5) I am missing the nonblocking function "mpi.irecv.Robj". Is there any reason for not having this function? Best Markus -- Dipl.-Tech. Math. Markus Schmidberger Ludwig-Maximilians-Universität München IBE - Insti

[Rd] R crashes while printing variable read from read.delim() (PR#10366)

Full_Name: Markus Breitenbach Version: 2.5.1 OS: Windows Submission from: (NULL) (70.58.24.243) > cdcr <- read.delim("cdcr_flat_survival.dat") > dim(cdcr) [1] 7162 387 > cdcr # results in stack overflow # bug reproduced in 2.4.1/l

[Rd] Rmpi_0.5-4 and MPICH2 does not work

ideas for debugging? I build Rmpi by my self with Rtools: Rcmd build --binary Rmpi_0.5-4\Rmpi It is working well, but there is a warning: "this package has a configure script. It probably needs manual configuration" Are there any problems by this warning? Best Markus -- Dipl.-

[Rd] Snow on Windows Cluster

package="Rmpi"), slavearg=arg, nslaves=count) } else{ # for unix count <- mpi.comm.spawn(slave = "/usr/bin/env", slavearg = args, nslaves = count, intercom

[Rd] Rmpi and OpenMPI ?

Hello, I found your discussion about Rmpi and openMpi at the R-devels archive. Did you managed to run Rmpi on openMPI (completely)? We try to do this installation at a OS debian with the "openmpi-common" package, but it is not working. For example there is no "mpi.h" Tha