[Rd] release build of ChemmineR failing

2018-02-07 Thread Kevin Horan
The release version of ChemmineR is failing on windows. It seems to be a build script issue though, possibly something on your side. The package was building fine a few weeks ago and I have not modified it. Can you please have a look? Thanks. "C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/Rscript" -e "l

[Rd] rsvg on mac

2018-02-07 Thread Kevin Horan
The ChemmineR build is failing on the mac due to a new dependency not being available, the package "rsvg". Would it be possible to install that on the mac build machine? Thanks. http://bioconductor.org/checkResults/devel/bioc-LATEST/ChemmineR/merida2-install.html Kevin

Re: [Rd] using openbabel plugins in R

2013-03-27 Thread Kevin Horan
th it. Because of this, 2.3.2 failed in the same way as 2.2.3 (the version actually installed), but for a different reason (It couldn't find the modules directory ). Actually installing 2.3.2 fixed the problem. Kevin On 03/27/2013 11:20 AM, Simon Urbanek wrote: On Mar 27, 2013, at 1:02 PM, K

Re: [Rd] using openbabel plugins in R

2013-03-27 Thread Kevin Horan
how to accomplish this? Thanks. Also, here is the dlopen command that openbabel uses: dlopen(lib_name.c_str(), RTLD_LAZY | RTLD_GLOBAL) Kevin On 03/26/2013 06:54 AM, Dirk Eddelbuettel wrote: On 25 March 2013 at 12:50, Kevin Horan wrote: | I posted this in openbabel-devel but didn&#x

[Rd] using openbabel plugins in R

2013-03-26 Thread Kevin Horan
I posted this in openbabel-devel but didn't get much help, so hopefully someone here can help. I don't think its too openbabel specific. I would like to make use of open babel from within the R language. Initially I just need to do some format conversions, but may expand the usage to other parts

Re: [Rd] compiling C code using headers from another R package

2013-03-12 Thread Kevin Horan
On 03/12/2013 09:55 AM, Simon Urbanek wrote: On Mar 12, 2013, at 12:30 PM, Kevin Horan wrote: Thanks for your input. To clarify, I don't need to use any part of GSL in my R code, nor do I wish to make any part of it accessible to users of eiR. I need it to compile other C/C++ code

[Rd] compiling C code using headers from another R package

2013-03-12 Thread Kevin Horan
best and easiest way, but I just wanted to see if there was any way to make it easier for the user. So, any other suggestions about how this could be accomplished? Thanks. Kevin On 03/12/2013 05:26 AM, Simon Urbanek wrote: Kevin, On Mar 11, 2013, at 5:20 PM, Kevin Horan wrote: I am devel

[Rd] compiling C code using headers from another R package

2013-03-12 Thread Kevin Horan
I am developing an R package, eiR, which depends on another C library, GNU scientific library (GSL). In order to make life easier for the user, it would be nice to not have this as an external dependency, thus I would like to wrap this library in another R package, say GSLR for example. Thus