Re: [Rd] Standard method for S4 object

2008-02-24 Thread Katharine Mullen
I don't know of any '"non official list" of what method a new S4 object should have' - such a list would have to depend on what the object represents. If it represents the output of fitting a model, then methods for 'residuals', 'fitted' and 'coefficients' would probably be nice. Also, out of cu

Re: [Rd] Puzzling message: "no man files in this package"

2007-12-01 Thread Katharine Mullen
:-). > > I've uploaded the package to CRAN incoming (penalized_0.9-17.tar.gz), > should you still want to have a look. > > My apologies for bothering you with a semi-reproducible (?!) problem. > > Jelle > > > > -Original Message- > > From: Katharine Mu

Re: [Rd] Puzzling message: "no man files in this package"

2007-12-01 Thread Katharine Mullen
Dear Jelle, Could you put the package somewhere public? This would make it easier to diagnose the problem. On Fri, 30 Nov 2007 [EMAIL PROTECTED] wrote: > Dear R developers, > > When building/checking my package (in R 2.6.1 under windows) I run into > some messages that I do not completely unde

Re: [Rd] help("R_LIBS") brings up the wrong help file (PR#10475)

2007-11-28 Thread Katharine Mullen
help(R_LIBS) is the same as help(.libPaths) for me. It appears you're running 2.5.0 - you could try updating, and then see if the issue still exists. --- platform x86_64-unknown-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 2

[Rd] nls with algorithm = "port", starting values

2007-04-16 Thread Katharine Mullen
The documentation for nls says the following about the starting values: start: a named list or named numeric vector of starting estimates. Since R 2.4.0, when 'start' is missing, a very cheap guess for 'start' is tried (if 'algorithm != "plinear"'). It may be a good idea to d

[Rd] typo in nls.Rd

2007-02-26 Thread Katharine Mullen
; should be `if'. ---- Katharine Mullen Department of Physics and Astronomy Faculty of Sciences Vrije Universiteit Amsterdam de Boelelaan 1081 1081 HV Amsterdam The Netherlands room: T.1.06 tel: +31 205987870 fax: +31 205987992 e-mail: [EMAIL PROTECTED] http:/

Re: [Rd] convolve: request for "usual" behaviour + some improvements + some fixes

2007-02-06 Thread Katharine Mullen
ft(y) > before to multiply it by fft(x). Without going into too many > details, I'll just say that this "trick" doesn't play well > with the type="o" option hence the special treatment of > y when 'type' is not "circular" and &#