Re: [Rd] Package Building and Name Space

2008-01-23 Thread James W. MacDonald
;MyPackage' has no name space and is not on the search path >> Calls: ... -> switch -> sys.source -> eval -> >> eval -> :: >> Execution halted >> >> 'MyFunction' contains 'strapply' from gsubfn. >> >> Please tell me wher

Re: [Rd] Best practices - R CMD check and vignettes

2007-09-19 Thread James W. MacDonald
ons of R, but under R-2.6.0alpha, > the vignettes are dumped into an inst directory in the .Rcheck > directory, where Sweave() and texi2dvi() are run. Unfortunately, the > above code chunks no longer work. > > I can certainly hard code the first chunk to find the .Rdata file, but I >

Re: [Rd] suggesting \alias* for Rd files (in particular for S4 method documentation)

2007-08-30 Thread James W. MacDonald
her, substituting them with pairs of >> >> \section{Usage}{\preformatted{ >> }} >> \section{Arguments}{ >> } >> >> and putting all aliases marked above with * into internals, which is >> definitely not the best way of going around documentation and >

[Rd] rm error on Windows after R CMD INSTALL

2007-08-02 Thread James W. MacDonald
7;t have Cygwin installed. Any suggestions? Best, Jim -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 __ R-dev

Re: [Rd] xlsReadWrite Pro and embedding objects and files in Excel worksheets

2007-02-08 Thread James W. MacDonald
me and >>hopefully a lot of people. R developers tend to think that all >>scientists are running Linux on 64-bit computers, but most biomedical >>researches still store date in Excel files. This won't solve everybody's >>needs, but it could be a start. &g

Re: [Rd] R from SVN fails to build on win32

2007-02-06 Thread James W. MacDonald
ILD -c system.c >>> -o system.o >>> gcc -O3 -Wall -pedantic -std=gnu99 -I../include -I. -DHAVE_CONFIG_H >>> -DR_DLL_BUILD -c dos_glob.c -o dos_glob.o >>> gcc -c -o e_pow.o e_pow.S >>> gcc -

Re: [Rd] rm() deletes 'c' if c('a','b') is the argument (PR#9399)

2006-11-29 Thread James W. MacDonald
uot;last.warning" "myfun" > > > Steven McKinney > > Statistician > Molecular Oncology and Breast Cancer Program > British Columbia Cancer Research Centre > > email: [EMAIL PROTECTED] > > tel: 604-675-8000 x7561 > > BCCRC > Molecular Oncology > 675 West 10

Re: [Rd] x86_64, acml-3.5.0-gfortran64 and lme4

2006-10-16 Thread James W. MacDonald
ith Atlas and/or Goto's BLAS. > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > __________ > R-devel@r-project.org mailing list > https://stat.ethz.

Re: [Rd] Build error/zlib question

2006-09-29 Thread James W. MacDonald
rewind' >>> read_cdffile.o:read_cdffile.c:(.text+0x177): undefined reference >>> to `gzclose' collect2: ld returned 1 exit status make[3]: *** >>> [makecdfenv.dll] Error 1 make[2]: *** [srcDynlib] Error 2 >>> make[1]: *** [all] Error 2 make: *** [pkg-makecdfe

[Rd] R CMD build question

2006-09-22 Thread James W. MacDonald
al to the package is off? R CMD check does issue a warning that the vignette is missing, so maybe that is the intended result. Best, Jim -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCG