[Rd] Will there be 2016 issues of The R Journal?

2016-08-05 Thread Gordon K Smyth
n the publication schedule? Are there still plans for a June 2016 issue? Thanks Gordon - Professor Gordon K Smyth, Head, Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, http://www.statsci.org/

[Rd] Changing style for the Sweave vignettes

2014-11-14 Thread Gordon K Smyth
Date: Thu, 13 Nov 2014 12:09:47 +0100 From: January Weiner To: r-devel Subject: [Rd] Changing style for the Sweave vignettes As a user, I am always annoyed beyond measure that Sweave vignettes precede the code by a command line prompt. It makes running examples by simple copying of the commands

Re: [Rd] Using a function from splines.c in our package

2012-07-09 Thread Gordon K Smyth
Thanks. Our package has LGPL (>= 2) licence, so we'll copy with header and proper acknowledgements. Gordon On Mon, 9 Jul 2012, Prof Brian Ripley wrote: On Mon, 9 Jul 2012, Gordon K Smyth wrote: Dear all, I'm writing to ask for advice as to best practice. A PhD student wor

[Rd] Using a function from splines.c in our package

2012-07-09 Thread Gordon K Smyth
ns? Thanks a lot Gordon --------- Professor Gordon K Smyth, Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, Vic 3052, Australia. Tel: (03) 9345 2326, Fax (03) 9347 0852, htt

Re: [Rd] Standardized Pearson residuals (and score tests)

2011-03-17 Thread Gordon K Smyth
On Thu, 17 Mar 2011, peter dalgaard wrote: On Mar 16, 2011, at 23:29 , Gordon K Smyth wrote: Hi Peter and others, If it helps, I wrote a small function glm.scoretest() for the statmod package on CRAN to compute score tests from glm fits. The score test for adding a covariate, or any set

Re: [Rd] Standardized Pearson residuals (and score tests)

2011-03-16 Thread Gordon K Smyth
already know that. Regards Gordon - Professor Gordon K Smyth, NHMRC Senior Research Fellow, Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, Vic 3052, Australia. sm...@wehi.edu.au http

Re: [Rd] documentation cross references under R 2.10.0dev for Windows

2009-09-28 Thread Gordon K Smyth
ill follow this up with the Bioconductor people. The one exception is the self-reference to limma:00Index. This marked as a missing link, under Windows only, although it works fine. Gordon On Mon, 28 Sep 2009, Gordon K Smyth wrote: Rcmd check under R 2.10.0dev for Windows seems to be issuin

[Rd] documentation cross references under R 2.10.0dev for Windows

2009-09-27 Thread Gordon K Smyth
Rcmd check under R 2.10.0dev for Windows seems to be issuing a number of spurious warning messages about Rd cross-references. The following warning messages appear when checking the latest (non-public) version of the Bioconductor package limma. They appear only under Windows, not Unix or Mac.

[Rd] How to capture t-score and p-values from t.test

2006-03-26 Thread Gordon K Smyth
> Date: Sat, 25 Mar 2006 16:57:50 -0400 > From: Kjetil Brinchmann Halvorsen > <[EMAIL PROTECTED]> > Subject: Re: [Rd] How to capture t-score and p-values from t.test > To: "Bernzweig, Bruce \(Exchange\)" <[EMAIL PROTECTED]> > Cc: r-devel@r-project.org > > Bernzweig, Bruce (Exchange) wrote: >>

Re: [Rd] Citation for R

2005-06-13 Thread Gordon K Smyth
On Tue, June 14, 2005 12:49 am, Thomas Lumley said: > On Mon, 13 Jun 2005, Gordon K Smyth wrote: > >> This is just a note that R would get a lot more citations if the >> recommended citation was an article in a recognised journal or from a >> recognised publisher. >>

Re: [Rd] Citation for R

2005-06-13 Thread Gordon K Smyth
On Tue, June 14, 2005 1:30 am, Ted Harding said: > Is a journal reference necessary? I have seen many articles where > the statistical software (S-Plus, SPSS, SAS, etc.) was "cited" as > the User Manual, usually only available from the supplier of the > software, sometimes with a WWW URL. Such case

[Rd] Citation for R

2005-06-12 Thread Gordon K Smyth
This is just a note that R would get a lot more citations if the recommended citation was an article in a recognised journal or from a recognised publisher. I use R in work leading to publications often, and I strongly want to give the R core team credit for their work. However I find that I ca