[Rd] memory leak in png()

2023-01-16 Thread Edward Ionides
the spatPomp unit tests while testing the plot method. I can use pdf() instead, but the point here is to report the issue in case it is not known. I'm new to R package development and happy to accept any advice. Thanks, Ed Edward L. Ionides Associate Chair for Undergraduate Studies and

Re: [Rd] Guidelines when to use LF vs CRLF ("\n" vs. "\r\n") on Windows for new lines (line endings)?

2020-07-25 Thread M. Edward (Ed) Borasky
I will also add that shell scripts that are in Docker containers will often crash with confusing error messages if they have Windows line endings. On Sat, Jul 25, 2020 at 2:39 PM Duncan Murdoch wrote: > > On 25/07/2020 4:48 p.m., nos...@altfeld-im.de wrote: > > Dear R developers, > > > > I am dev

[Rd] Bug in plot.lm function (stats package): positioning of labels for extreme points.

2018-05-11 Thread Edward McNeil
ete [show.rsp] y.id[y.id < 0] <- y.id[y.id < 0] - strheight(" ")/3 text.id(xx, y.id, show.rsp) # delete [show.rsp] I tested these changes and they seem to work without breaking anything. If you want me to make a patch, then I can try. But I thought that these ch

[Rd] reshape function: allow split argument to include perl

2018-03-08 Thread Edward McNeil
t; seems to be only possible using perl. > x <- c("Q1.1.1", "Q1.1.2", "Q1.2.1", "Q1.2.2") > strsplit(x, "(\\.)(?=[^\\.]$)", perl=TRUE) [[1]] [1] "Q1.1" "1" [[2]] [1] "Q1.1" "2" [[3]] [1] &quo

Re: [Rd] Trouble installing Rcpp on AIX - missing "execinfo.h"

2014-10-31 Thread Edward Davignon
Mike, Perhaps this will help: http://cygwin.com/ml/cygwin/2012-04/msg00346.html Regards, Ed Davignon On Thu, Oct 30, 2014 at 12:13 AM, Mike Beddo wrote: > Greetings, > > When I try "install.packages('Rcpp')" it fails when compiling api.cpp > (line 39). This is Rcpp 0.11.3. I searched my filesy

[Rd] Working with optim in C

2012-06-08 Thread Edward Worbis
I've searched to find examples of how to work with the C versions of optim. I've separated out the function just to test on it alone, and currently I'm attempting to use fmmin as follows: !~~CODE ~~! double optimfn(int n, double *par, void *ex) { double * lambda = (double*)malloc(sizeo

Re: [Rd] problem with location of libraries 64-bit (opensuse)

2011-05-05 Thread M. Edward (Ed) Borasky
I've got an openSUSE 11.4 machine using R-patched - do I need to change anything? On Thu, May 5, 2011 at 12:55 PM, Detlef Steuer wrote: > Simon, > > thank you very much for the detailed answer. > >> This shows that rpy2 doesn't setup up the environment correctly (see the R >> script for the nec

[Rd] Bug query (PR#14173)

2009-12-30 Thread Edward . Gracely
I'm seeing a probable error in the way R boot.ci calculates certain confidence intervals. Not sure where to submit it. Should this go to the package maintainer? If so, how would I identify that person? =20 Thanks...Ed =20 Ed J. Gracely, Ph.D. Drexel University College of Medicine & Drexel Univ

[Rd] Building R-alpha with ATLAS libraries?

2009-03-26 Thread M. Edward (Ed) Borasky
al/atlas/lib -lptf77blas -lpthread -latlas -lgfortran -lm -ldl -lm >&5 /tmp/ccETmjPn.o: In function `main': /home/Projects/linux_perf_viz/build-scripts/R-alpha/conftest.c:218: undefined reference to `zgeev_' collect2: ld returned 1 exit status configure:38571: $? = 1 I checked the

[Rd] write.dta (foreign package)

2008-01-10 Thread Edward
Hi, I'd like to request that the 'write.dta' command also save the "var.labels" attributes of the data frame. 'read.dta' can read them, but 'write.dta' doesn't write them back. Thanks Edward McNeil -- Epidemiology Unit Faculty of Medi

[Rd] Adding a survival object to a data frame (PR#10510)

2007-12-12 Thread edward . m
Full_Name: Edward McNeil Version: 2.6.1 OS: Windows Submission from: (NULL) (203.170.234.5) I want to show students how the survival object looks like in R. Reproducible example: library(MASS) data(Aids2) attach(Aids2) status <- status=="D" stime <- death-diag surv <- Su

Re: [Rd] compiling R under cygwin

2007-08-21 Thread M. Edward (Ed) Borasky
Gabor Grothendieck wrote: > Besides Cygwin and VMware there is also the coLinux kernel which is > a native Linux kernel that runs on Windows. I have run R with the AndLinux > distro based on Ubuntu/coLinux/Xming on top of Windows with some success. > It has the advantage that it runs much faster

Re: [Rd] compiling R under cygwin

2007-08-21 Thread M. Edward (Ed) Borasky
Prof Brian Ripley wrote: > Yes, > >> What is the advantage of building this? > > was my question too. If you want a Unix-like version of R on PC hardware > running Windows why not run a Unix-like OS under a virtual machine? > > Quite a lot of the details are wrong: using FLIBS, BLAS_LIBS and L

Re: [Rd] Merge (PR#9699)

2007-05-28 Thread edward . m
4 3 2 2 5 5 2 3 3 6 6 1 --- Prof Brian Ripley wrote: > On Mon, 21 May 2007, [EMAIL PROTECTED] wrote: > >> Full_Name: Edward McNeil >> Version: 2.5.0 >> OS: Windows XP >> Submission from: (NULL) (203.170.234.5) >> >> >> This is a new bug introduce

[Rd] Merge (PR#9699)

2007-05-28 Thread edward . m
Full_Name: Edward McNeil Version: 2.5.0 OS: Windows XP Submission from: (NULL) (203.170.234.5) This is a new bug introduced to R2.5.0. Scenario: If one of the data frames to merge contains two variables that have the same name, then the data in first variable (of the same name) is copied to

Re: [Rd] An offer: R packages in Gentoo Land?

2006-07-02 Thread M. Edward (Ed) Borasky
Gentoo developer but I run Gentoo and R and would welcome an integrated Portage/CRAN/Bioconductor package management system. I would recommend joining the "gentoo-science" mailing list. Email me off list if you'd like an introduction. -- M. Edward (Ed) Borasky http://linuxca

Re: [Rd] Sys.setlocale upsets windows graphics device (PR#8887)

2006-05-22 Thread edward . m
[1] "LC_COLLATE=Thai_Thailand.874;LC_CTYPE=Thai_Thailand.874;LC_MONETARY=Thai_Thailand.874;LC_NUMERIC=C;LC_TIME=Thai_Thailand.874" --- Thanks Edward - Original Message - From: "Prof Brian Ripley" <[EMAIL PROTECTED]> To: <[EMAIL PROTECTED]> Cc: <[EMAIL PROTECTE

[Rd] Sys.setlocale upsets windows graphics device (PR#8887)

2006-05-22 Thread edward . m
Full_Name: Edward McNeil Version: 2.3.0 OS: Widows XP Submission from: (NULL) (203.170.234.5) Type the following: > Sys.setlocale("LC_ALL","C") > hist(1:10) CRASH __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Wish list

2006-01-01 Thread M. Edward (Ed) Borasky
t;typical scientific researcher" in a domain like bioinformatics or computer performance analysis will have available a two (physical 64-bit) processor 4GB workstation with a terabyte of local disk, plus, of course, access to a grid for the "big problems." :) At the moment, I d

Re: [Rd] R 2.1.1 slated for June 20

2005-06-12 Thread M. Edward (Ed) Borasky
Question: I just downloaded the daily Windows build of "R-devel" and it claims to be a pre-release of R 2.2.0. So ... is the next release 2.1.1 or 2.2.0? Or is there just not a readily-available Windows build of 2.1.1? Peter Dalgaard wrote: >The next version of R will be released (barring force m

Re: [Rd] Citation for R

2005-06-12 Thread M. Edward (Ed) Borasky
Gordon K Smyth wrote: >This is just a note that R would get a lot more citations if the recommended >citation was an >article in a recognised journal or from a recognised publisher. > >I use R in work leading to publications often, and I strongly want to give the >R core team credit >for their