Re: [Rd] establishing a Code of Conduct for R

2017-09-13 Thread Suzen, Mehmet
On 13 September 2017 at 13:22, Brian G. Peterson wrote: > I am not an official representative of the R team, so this is only my > opinion. > Thank you. > It seems to me that you are trying to create a solution to a problem > which does not exist. I am not trying to create any solution and not m

Re: [Rd] vcov and survival

2017-09-13 Thread Fox, John
Dear Terry, Even the behaviour of lm() and glm() isn't entirely consistent. In both cases, singularity results in NA coefficients by default, and these are reported in the model summary and coefficient vector, but not in the coefficient covariance matrix: > mod.lm <-

[Rd] vcov and survival

2017-09-13 Thread Therneau, Terry M., Ph.D.
I have just noticed a difference in behavior between coxph and lm/glm: if one or more of the coefficients from the fit in NA, then lm and glm omit that row/column from the variance matrix; while coxph retains it but sets the values to zero. Is this something that should be "fixed", i.e., made

[Rd] y label for X11 graphics

2017-09-13 Thread Therneau, Terry M., Ph.D.
In the following plot, the y label is missing if it is too long. x11(type="Xlib") plot(1:5, 1:5, ylab="Do, a deer, a female deer") # missing label plot(1:5, 1:5, ylab="Do") # label is present All is well for x11(type="cairo") This is true both under R devel 2017-09-01

Re: [Rd] establishing a Code of Conduct for R

2017-09-13 Thread Brian G. Peterson
On Wed, 2017-09-13 at 12:54 +0200, Suzen, Mehmet wrote: > Dear Colleagues/Developers/R enthusiasts, > > Would it be possible to develop a code of conduct (CoC) document for > R lists, CRAN submissions that all developers/maintainers to follow? > This may help all of us to better communicate and m

[Rd] establishing a Code of Conduct for R

2017-09-13 Thread Suzen, Mehmet
Dear Colleagues/Developers/R enthusiasts, Would it be possible to develop a code of conduct (CoC) document for R lists, CRAN submissions that all developers/maintainers to follow? This may help all of us to better communicate and move forward together. There is a similar effort from Python communi

[Rd] unpackPkgZip: "unable to move temporary installation" due to antivirus

2017-09-13 Thread Mike Toews
Hi, Me and an office colleague on Microsoft Windows 10 PCs are having difficulty installing any package. This is a recent issue for us, and we suspect our McAfee antivirus has modified by our IT department. Let's take, for example, install.packages("mypackage"), here is the output: package ‘mypac

[Rd] CRAN incoming checks / winbuilder on demand results for R-devel

2017-09-13 Thread Uwe Ligges
Dear package developers, given some very recent changes in R-devel, many packages under R-devel have to be reinstalled. Due to maintainance work on CRAN we probably won't process submissions today. R-devel results from winbuilder will be flaky at least during the next 10 hours. Best, Uwe Lig