Re: [Rd] pairwiseAlignment Improvements

2017-04-27 Thread Dario Strbenac
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[Rd] pairwiseAlignment Improvements

2017-04-27 Thread Dario Strbenac
Good day, The location of indels can be retrieved from a PairwiseAlignmentsSingleSubject object by using indel. Determining any difference between the two sequences, including substitutions, is not quick nor easy. I suppose that summary displays details of the mismatches, but the variable is of

Re: [Rd] tempdir() may be deleted during long-running R session

2017-04-27 Thread frederik
> > It might still be useful if R could sometimes detect when automated > > cleanup happened and warn the user. Perhaps a simple way could be to > > always create an empty file inside session directory, like > > ".tmp_cleaner_trap". R would never touch this file, but check its > > existence time-to

Re: [Rd] tempdir() may be deleted during long-running R session

2017-04-27 Thread frederik
> Frederick posted the way to do this in systems using systemd. We should be > putting that in place, or the equivalent on systems using other tempfile > cleanups. This looks to me like something that "make install" should do, or > perhaps it should be done by people putting together packages for

[Rd] prefixed zlib and bzip2 headers

2017-04-27 Thread Jones, Michael
Hello, I'm trying to compile R-3.3.3 or R-3.4.0 on a RHEL6 system that I've prefixed the latest headers down a shared utility path, I've sourced this path in LD_LIBRARY_LATH, R_LD_LIBRARY_PATH, and dropping the headers down /src/include which appears to be the default R_include_dir but it will