[Rd] Fix for bug in arima function

2015-04-20 Thread Patrick Perry
There is currently a bug in the arima function. Namely, for arima models with differencing or seasonal differencing, the innovation variance estimator uses the wrong denominator whenever xreg is non-null. This is the case, for example, when fitting an ARIMA(p,1,q) model with a drift term (common

Re: [Rd] truncated warning messages

2015-04-20 Thread Hervé Pagès
On 04/17/2015 08:25 PM, Jeroen Ooms wrote: On Fri, Apr 17, 2015 at 6:05 PM, Hervé Pagès mailto:hpa...@fredhutch.org>> wrote: As you can see the warning message is truncated so I can't see what happened to these packages. In this case you could also increase options("warning.length")

[Rd] Adding lock capabilities to parallel?

2015-04-20 Thread Ivan Popivanov
Hello, Sometime ago I had to solve the problem of writing to common files from parallel R processes. For the synchronization, I created a small package ( https://r-forge.r-project.org/projects/flock/) to perform a lock/unlock between different processes. My feeling is that this is something that b

Re: [Rd] quieting the "apparent S3 methods" warning

2015-04-20 Thread Gergely Daróczi
Dear All, I have a similar issue that I would like to resolve before submitting a new version of a package to CRAN: I have a "pander" S3 method and a function called "pander.return", which a wrapper around the first (capturing the output of "pander"). Now I'm aware of the fact, that it should have