Re: [Rd] Comments requested on "changedFiles" function

2013-09-06 Thread Karl Millar
On Fri, Sep 6, 2013 at 7:03 PM, Duncan Murdoch wrote: > On 13-09-06 9:21 PM, Karl Millar wrote: >> >> Hi Duncan, >> >> I like the interface of this version a lot better, but there's still a >> bunch of implementation details that need fixing: >> >> * As previously mentioned, there are important ca

Re: [Rd] Comments requested on "changedFiles" function

2013-09-06 Thread Duncan Murdoch
On 13-09-06 9:21 PM, Karl Millar wrote: Hi Duncan, I like the interface of this version a lot better, but there's still a bunch of implementation details that need fixing: * As previously mentioned, there are important cases where the mtime values change in ways that this code doesn't detect. *

Re: [Rd] Comments requested on "changedFiles" function

2013-09-06 Thread Karl Millar
Hi Duncan, I like the interface of this version a lot better, but there's still a bunch of implementation details that need fixing: * As previously mentioned, there are important cases where the mtime values change in ways that this code doesn't detect. * If the timestamp file (which is usually i

Re: [Rd] directives to explicitely exclude objects from import into namespaces

2013-09-06 Thread Kasper Daniel Hansen
Well, it makes sense to me, since I have had the same issue. Suppose you have two packages A and B. You would really like to import both of them since it is too much work to figure out exactly which functions you use, and you consider both of them fundamental to your own work. So you would like

Re: [Rd] Comments requested on "changedFiles" function

2013-09-06 Thread Scott Kostyshak
On Fri, Sep 6, 2013 at 7:40 PM, Scott Kostyshak wrote: > On Fri, Sep 6, 2013 at 3:46 PM, Duncan Murdoch > wrote: >> On 06/09/2013 2:20 PM, Duncan Murdoch wrote: >>> >>> I have now put the code into a temporary package for testing; if anyone >>> is interested, for a few days it will be downloadab

Re: [Rd] Comments requested on "changedFiles" function

2013-09-06 Thread Duncan Murdoch
On 13-09-06 7:40 PM, Scott Kostyshak wrote: On Fri, Sep 6, 2013 at 3:46 PM, Duncan Murdoch wrote: On 06/09/2013 2:20 PM, Duncan Murdoch wrote: I have now put the code into a temporary package for testing; if anyone is interested, for a few days it will be downloadable from fisher.stats.uwo.c

Re: [Rd] directives to explicitely exclude objects from import into namespaces

2013-09-06 Thread Duncan Murdoch
On 13-09-06 4:54 PM, Dr. Peter Ruckdeschel wrote: Hi, recently R CMD check --as-cran has noticed some more issues with package namespace imports with the recommended remedy to use importFrom() and friends. In my case, there was only a conflict restricted to some few imports, while I would prefe

Re: [Rd] Comments requested on "changedFiles" function

2013-09-06 Thread Scott Kostyshak
On Fri, Sep 6, 2013 at 3:46 PM, Duncan Murdoch wrote: > On 06/09/2013 2:20 PM, Duncan Murdoch wrote: >> >> I have now put the code into a temporary package for testing; if anyone >> is interested, for a few days it will be downloadable from >> >> fisher.stats.uwo.ca/faculty/murdoch/temp/testpkg_1.

Re: [Rd] Comments requested on "changedFiles" function

2013-09-06 Thread Duncan Murdoch
I have now put the code into a temporary package for testing; if anyone is interested, for a few days it will be downloadable from fisher.stats.uwo.ca/faculty/murdoch/temp/testpkg_1.0.tar.gz This uses two functions: fileSnapshot -- takes a snapshot changedFiles -- compares two snapshots, or on

Re: [Rd] Comments requested on "changedFiles" function

2013-09-06 Thread Duncan Murdoch
On 06/09/2013 2:20 PM, Duncan Murdoch wrote: I have now put the code into a temporary package for testing; if anyone is interested, for a few days it will be downloadable from fisher.stats.uwo.ca/faculty/murdoch/temp/testpkg_1.0.tar.gz Sorry, error in the URL. It should be http://www.stats.u

Re: [Rd] libR.so: cannot open shared object file

2013-09-06 Thread gianluca.mastranto...@yahoo.it
Thank you, now all works well. G.M. Il 06/09/13 15:28, brian avants ha scritto: > Hello Everyone > > I have been following this thread because I have similar issues with > an outside-of-R package. The problem is related to dylib loading > i.e. of the form > > Error in dyn.load(file, DLLpath

[Rd] directives to explicitely exclude objects from import into namespaces

2013-09-06 Thread Dr. Peter Ruckdeschel
Hi, recently R CMD check --as-cran has noticed some more issues with package namespace imports with the recommended remedy to use importFrom() and friends. In my case, there was only a conflict restricted to some few imports, while I would prefer to still import all the non-conflicting objects, m

Re: [Rd] libR.so: cannot open shared object file

2013-09-06 Thread Prof Brian Ripley
On 06/09/2013 14:28, brian avants wrote: Hello Everyone I have been following this thread because I have similar issues with an outside-of-R package. The problem is related to dylib loading i.e. of the form Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/Us

Re: [Rd] libR.so: cannot open shared object file

2013-09-06 Thread brian avants
Hello Everyone I have been following this thread because I have similar issues with an outside-of-R package. The problem is related to dylib loading i.e. of the form Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/Users/stnava/code/gitANTs/ANTsR/src/ANTS/ANTS-

Re: [Rd] Importing function that is previously imported by other package

2013-09-06 Thread Ulrike Grömping
Am 06.09.2013 12:53, schrieb Duncan Murdoch: On 13-09-06 5:36 AM, Ulrike Grömping wrote: Dear developeRs, I encounter the following problem: in the current version of my package FrF2, certain calls to a functioni do not work when package combinat is loaded, because function combn from combinat

Re: [Rd] Importing function that is previously imported by other package

2013-09-06 Thread Duncan Murdoch
On 13-09-06 5:36 AM, Ulrike Grömping wrote: Dear developeRs, I encounter the following problem: in the current version of my package FrF2, certain calls to a functioni do not work when package combinat is loaded, because function combn from combinat masks the function from utils that my package

[Rd] Importing function that is previously imported by other package

2013-09-06 Thread Ulrike Grömping
Dear developeRs, I encounter the following problem: in the current version of my package FrF2, certain calls to a functioni do not work when package combinat is loaded, because function combn from combinat masks the function from utils that my package uses. I tried to solve this issue by impor

Re: [Rd] Comments requested on "changedFiles" function

2013-09-06 Thread Duncan Murdoch
On 13-09-06 2:46 AM, Karl Millar wrote: Comments inline: On Wed, Sep 4, 2013 at 6:10 PM, Duncan Murdoch wrote: On 13-09-04 8:02 PM, Karl Millar wrote: Hi Duncan, I think this functionality would be much easier to use and understand if you split it up the functionality of taking snapshots