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The lmer() function in the lme4 package has some code of the form
mc <- match.call()
mc[[1]] <- as.name("lFormula")
lmod <- eval(mc, parent.frame(1L))
this is a fairly common idiom in R, found e.g. in lm(), used when
one wants to pass all of the
Hi Kamal,
Sounds like a Bioconductor question. Would be better to ask on the
Bioc-devel mailing list. See you there.
Cheers,
H.
On 06/26/2013 07:37 AM, Kamal wrote:
Few more details:
clRes object is essentially a list of SummarizedExperiment class object (of
GenomicRanges package). Each obje
Hi Ge,
Here is one way to do this with the Biostrings C API. It does
2 passes on the file. There is also a 1-pass way but not necessarily
worth it because not as memory efficient.
The code below is untested (not even guaranteed to compile)!
SEXP read_text_file_in_BStringSet(FILE *FN)
{
SEXP
On Jun 27, 2013, at 3:37 PM, Ge Tan wrote:
> Hi Simons,
>
> Thanks for your reply.
> 1 is just an example I wrote. In fact, there can be millions of strings
> (all of them are different and each has thousands of characters) I want to
> read from the file. So if I use mkChar it will store t
Hi Simons,
Thanks for your reply.
1 is just an example I wrote. In fact, there can be millions of strings
(all of them are different and each has thousands of characters) I want to read
from the file. So if I use mkChar it will store the same amount of the copies
in the global cache.
The pr
On Jun 27, 2013, at 9:18 AM, Ge Tan wrote:
> Hi,
>
> I want to read a text file into R with .Call().
> So I define some NEW_CHARACTER() to store the chracters read and use
> SET_STRING_ELT to fill the elements.
>
> e.g.
> PROTECT(qNames = NEW_CHARACTER(1));
> char *foo; // This foo holds t
> Marc Schwartz
> on Thu, 27 Jun 2013 11:26:23 -0500 writes:
> On Jun 27, 2013, at 10:32 AM, Martin Maechler
wrote:
>> Maybe this is just from inside ETH Zurich,
>> but I haven't seen this before in many years:
>> for > 15 minutes now, for me and at least someone e
On Jun 27, 2013, at 10:32 AM, Martin Maechler
wrote:
> Maybe this is just from inside ETH Zurich,
> but I haven't seen this before in many years:
> for > 15 minutes now, for me and at least someone else here,
>
> - Google (incl. Gmail, calendar..) is entirely unreachable
> - Twitter is "conne
Maybe this is just from inside ETH Zurich,
but I haven't seen this before in many years:
for > 15 minutes now, for me and at least someone else here,
- Google (incl. Gmail, calendar..) is entirely unreachable
- Twitter is "connecting" and is not reached (in the browser),
- three major Swiss news
Hi,
I want to read a text file into R with .Call().
So I define some NEW_CHARACTER() to store the chracters read and use
SET_STRING_ELT to fill the elements.
e.g.
PROTECT(qNames = NEW_CHARACTER(1));
char *foo; // This foo holds the string I want.
while(foo = readLine(FN)){
SET_STRING_ELT(q
Hi Kamal,
I suspect this to be because you did not load the package on each core so the
S4 definitions are not available there. The solution would be to specifically
load the library at each core prior to calling clusterApplyLB. (I vaguely
remember once having a similar problem where something
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