Re: [Rd] how to control the environment of a formula

2013-04-20 Thread Thomas Alexander Gerds
thanks. yes, I was considering to use as.character(f) but your solution 2 is much better -- did not know ' was a R function as well. just checked: model.frame does not get confused and this will be used to evaluate formula by all functions in my packages. however, there could be related problems

[Rd] Withdrawal of package Rigroup-0.84.0 from CRAN

2013-04-20 Thread Kevin Hendricks
Hi Brian and Uwe, Given my package passes all checks but I have received no further responses since your initial reply, I assume you are no longer interested in the package Rigroup-0.84.0. Your concerns about my chosen license being too vague "GPL | LGPL" is in direct contradiction to what you

Re: [Rd] Publishing my Package on CRAN

2013-04-20 Thread Spencer Graves
I recommend CRAN submission. It can make your work more available to others, not only by reference from your journal article but also the reverse: Giving other R users access to your journal article. Often, I look for publications with software, because the open source software makes i

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Gabor Grothendieck
On Sat, Apr 20, 2013 at 9:13 PM, Hadley Wickham wrote: >> As far as I can tell, the steps you are recommending take place in an >> earlier build step. This would require the user who wants to do this to >> rebuild Rtools in its entirety, which is more trouble than it is likely to >> be worth. Esp

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Hadley Wickham
> As far as I can tell, the steps you are recommending take place in an > earlier build step. This would require the user who wants to do this to > rebuild Rtools in its entirety, which is more trouble than it is likely to > be worth. Especially when you can avoid the problem by using your own bat

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Kevin Coombes
On 4/20/2013 1:21 PM, Duncan Murdoch wrote: On 13-04-20 2:02 PM, Kevin Coombes wrote: On 4/20/2013 12:54 PM, Duncan Murdoch wrote: It's not a change to Rtools, it's a change is to the build system in R: it allows you to rename sort or find in your own copy of Rtools, and R will use whatever y

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Duncan Murdoch
On 13-04-20 2:39 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 2:21 PM, Duncan Murdoch wrote: On 13-04-20 2:02 PM, Kevin Coombes wrote: On 4/20/2013 12:54 PM, Duncan Murdoch wrote: On 13-04-20 12:30 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch w

Re: [Rd] Publishing my Package on CRAN

2013-04-20 Thread Henrik Bengtsson
If you're not aware of it, you should know of: http://cran.r-project.org/web/packages/policies.html /Henrik On Sat, Apr 20, 2013 at 8:42 AM, Uwe Ligges wrote: > > > On 19.04.2013 06:38, liuyipei wrote: >> >> Hi, >> >> I have a simple package with two functions. It essentially implements >> esti

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Gabor Grothendieck
On Sat, Apr 20, 2013 at 2:21 PM, Duncan Murdoch wrote: > On 13-04-20 2:02 PM, Kevin Coombes wrote: >> >> >> On 4/20/2013 12:54 PM, Duncan Murdoch wrote: >>> >>> On 13-04-20 12:30 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch wrote: > > On 13

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Duncan Murdoch
On 13-04-20 2:02 PM, Kevin Coombes wrote: On 4/20/2013 12:54 PM, Duncan Murdoch wrote: On 13-04-20 12:30 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch wrote: On 13-04-20 11:09 AM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 10:45 AM, Hadley Wickham w

Re: [Rd] how to control the environment of a formula

2013-04-20 Thread Gabor Grothendieck
On Sat, Apr 20, 2013 at 1:44 PM, Duncan Murdoch wrote: > On 13-04-19 2:57 PM, Thomas Alexander Gerds wrote: >> >> >> hmm. I have tested a bit more, and found this perhaps more difficult >> solve situation. even though I delete x, since x is part of the output >> of the formula, the size of the obj

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Gabor Grothendieck
On Sat, Apr 20, 2013 at 1:54 PM, Duncan Murdoch wrote: > On 13-04-20 12:30 PM, Gabor Grothendieck wrote: >> >> On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch >> wrote: >>> >>> On 13-04-20 11:09 AM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 10:45 AM, Hadley Wickham w

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Kevin Coombes
On 4/20/2013 12:54 PM, Duncan Murdoch wrote: On 13-04-20 12:30 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch wrote: On 13-04-20 11:09 AM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 10:45 AM, Hadley Wickham wrote: Just curious: how often do you use

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Duncan Murdoch
On 13-04-20 12:30 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch wrote: On 13-04-20 11:09 AM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 10:45 AM, Hadley Wickham wrote: Just curious: how often do you use the Windows find command? We have put instruc

Re: [Rd] how to control the environment of a formula

2013-04-20 Thread Duncan Murdoch
On 13-04-19 2:57 PM, Thomas Alexander Gerds wrote: hmm. I have tested a bit more, and found this perhaps more difficult solve situation. even though I delete x, since x is part of the output of the formula, the size of the object is twice as much as it should be: test <- function(x){ x <- rn

Re: [Rd] Linux distribution with gcc 4.8 and AddressSanitizer -- solved

2013-04-20 Thread Thomas Petzoldt
It works! After some hours of compilation, reading the docs and testing, I got it now working and was able to reproduce (and fix) the reported error message. Then ingredients of the successful AdressSanitizer (ASAN) system were: - Fedora 19 Alpha RC4 with gcc 4.8 on VirtualBox, - manual install

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Gabor Grothendieck
On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch wrote: > On 13-04-20 11:09 AM, Gabor Grothendieck wrote: >> >> On Sat, Apr 20, 2013 at 10:45 AM, Hadley Wickham >> wrote: > > Just curious: how often do you use the Windows find command? We have > put > instructions in place for p

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Duncan Murdoch
On 13-04-20 11:09 AM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 10:45 AM, Hadley Wickham wrote: Just curious: how often do you use the Windows find command? We have put instructions in place for people to run the install process with a renamed Rtools find command (which I think is the

Re: [Rd] Publishing my Package on CRAN

2013-04-20 Thread Uwe Ligges
On 19.04.2013 06:38, liuyipei wrote: Hi, I have a simple package with two functions. It essentially implements estimators and data simulation for a paper I am writing for immunology (and in some sense, ecology). How long is the typical CRAN review process Typically less than 12 hours. --

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Gabor Grothendieck
On Sat, Apr 20, 2013 at 10:45 AM, Hadley Wickham wrote: >>> Just curious: how often do you use the Windows find command? We have put >>> instructions in place for people to run the install process with a renamed >>> Rtools find command (which I think is the only conflict). The issue is that >>>

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Hadley Wickham
>> Just curious: how often do you use the Windows find command? We have put >> instructions in place for people to run the install process with a renamed >> Rtools find command (which I think is the only conflict). The issue is that >> more users who want to use the command line commands are fami

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Duncan Murdoch
On 13-04-19 10:03 PM, Gabor Grothendieck wrote: On Fri, Apr 19, 2013 at 8:47 PM, Duncan Murdoch wrote: On 13-04-19 5:37 PM, Kevin Coombes wrote: Having finally found some free time, I was going to use it to update a bunch of R packages from 2.15 to 3.0. I am running Windows 7, 64-bit profess