Re: [Rd] R CMD SHLIB error bad value (core2) for -mtune= switch

2012-10-23 Thread David Winsemius
On Oct 23, 2012, at 10:58 AM, smzyij wrote: > Thank you so much Prof Ripley. > > You are right. So instead of using Windows R, I tried to compile binary R > under Cygwin, but it errored out everytime at different places when I tried > different options to configure. So I guess I need to seek oth

[Rd] Typos/omissions/inconsistencies in man page for clusterApply

2012-10-23 Thread Hervé Pagès
Hi, Here are the issues I found: Typos - (a) Found: It a parallel version of ‘evalq’, "is" missing. (b) Found: 'parLapplyLB', 'parSapplyLB' are load-balancing versions, intended for use when applying ‘FUN’ to 'parLapplyLB' has no 'FUN' arg (more on this below). (c) Found: 'c

Re: [Rd] 12-bit functionality in tiff package

2012-10-23 Thread Joseph Barry
Dear Ben, Many thanks for the reply. Actually, rtiff is a separate package to tiff. I have continued my correspondence with the latter's maintainer (Simon Urbanek) off-list. Perhaps I should have done this directly from the beginning, rather than going through list. Best wishes, Joseph Barry

Re: [Rd] 12-bit functionality in tiff package

2012-10-23 Thread Ben Bolker
Joseph Barry embl.de> writes: > We have recently been using the tiff package for reading tiff images > into the Bioconductor Package EBImage. This has been extremely > helpful in conjunction with other steps to eliminate dependencies on > ImageMagick. > However, it seems that 12-bit images are

Re: [Rd] Spurious warning when calling data() ?

2012-10-23 Thread Prof Brian Ripley
On 23/10/2012 20:20, Laurent Gautier wrote: Hi, When calling data, a warning seems to have been left behind data(package="stats", verbose=FALSE) Warning message: In data(package = "stats", verbose = FALSE) : datasets have been moved from package 'stats' to package 'datasets' Why do you t

Re: [Rd] Spurious warning when calling data() ?

2012-10-23 Thread Laurent Gautier
On 2012-10-23 21:43, Duncan Murdoch wrote: On 23/10/2012 3:20 PM, Laurent Gautier wrote: Hi, When calling data, a warning seems to have been left behind > data(package="stats", verbose=FALSE) Warning message: In data(package = "stats", verbose = FALSE) : datasets have been moved from packa

Re: [Rd] Spurious warning when calling data() ?

2012-10-23 Thread Duncan Murdoch
On 23/10/2012 3:20 PM, Laurent Gautier wrote: Hi, When calling data, a warning seems to have been left behind > data(package="stats", verbose=FALSE) Warning message: In data(package = "stats", verbose = FALSE) : datasets have been moved from package 'stats' to package 'datasets' What is s

[Rd] Spurious warning when calling data() ?

2012-10-23 Thread Laurent Gautier
Hi, When calling data, a warning seems to have been left behind data(package="stats", verbose=FALSE) Warning message: In data(package = "stats", verbose = FALSE) : datasets have been moved from package 'stats' to package 'datasets' (full version details further below). Best, Laurent ses

Re: [Rd] R CMD SHLIB error bad value (core2) for -mtune= switch

2012-10-23 Thread smzyij
Thank you so much Prof Ripley. You are right. So instead of using Windows R, I tried to compile binary R under Cygwin, but it errored out everytime at different places when I tried different options to configure. So I guess I need to seek other alternate ways. Is there any chance you think that I

Re: [Rd] suppress *specific* warnings?

2012-10-23 Thread Martin Morgan
On 10/22/2012 09:57 AM, luke-tier...@uiowa.edu wrote: On Sun, 21 Oct 2012, Martin Morgan wrote: On 10/21/2012 12:28 PM, Ben Bolker wrote: Not desperately important, but nice to have and possibly of use to others, is the ability to suppress specific warnings rather than suppressing warnings

[Rd] 12-bit functionality in tiff package

2012-10-23 Thread Joseph Barry
Hi, We have recently been using the tiff package for reading tiff images into the Bioconductor Package EBImage. This has been extremely helpful in conjunction with other steps to eliminate dependencies on ImageMagick. However, it seems that 12-bit images are not supported. We were wondering if