Re: [Rd] Change in the RNG implementation?

2012-10-21 Thread Hervé Pagès
Hi Duncan, Martin, Thanks for your answers. For my real case I was generating millions of random positions on a genome. I compared sample.int() performance between R-2.15.1 and R-devel, and, for me, it performs better in R-2.15.1 (almost 3x faster and also uses slightly less memory): With R-2.

Re: [Rd] suppress *specific* warnings?

2012-10-21 Thread Ben Bolker
On 12-10-21 09:08 PM, Martin Morgan wrote: > On 10/21/2012 12:28 PM, Ben Bolker wrote: >> >>Not desperately important, but nice to have and possibly of use to >> others, is the ability to suppress specific warnings rather than >> suppressing warnings indiscriminately. I often know of a specifi

Re: [Rd] suppress *specific* warnings?

2012-10-21 Thread Martin Morgan
On 10/21/2012 12:28 PM, Ben Bolker wrote: Not desperately important, but nice to have and possibly of use to others, is the ability to suppress specific warnings rather than suppressing warnings indiscriminately. I often know of a specific warning that I want to ignore (because I know that's

[Rd] suppress *specific* warnings?

2012-10-21 Thread Ben Bolker
Not desperately important, but nice to have and possibly of use to others, is the ability to suppress specific warnings rather than suppressing warnings indiscriminately. I often know of a specific warning that I want to ignore (because I know that's it's a false positive/ignorable), but the cu

Re: [Rd] R-2.15.1 CMD CHECK output: "Call Sequence"

2012-10-21 Thread Mark Cowley
Dear Brian, thanks for the reply. Indeed, metaGSEA was the package being CHECK'ed & it turns out that the R CMD CHECK metaGSEA errors were due to a missing 'Depends: methods' from the DESCRIPTION of a dependent package. I went back and CHECK'ed under R 2.14.2 and R 2.13.1, and indeed you're ri