Re: [Rd] location of check.Renviron on Windows

2012-02-01 Thread Prof Brian Ripley
On 01/02/2012 19:57, Robert M. Flight wrote: Thanks Simon, that did the ticket. Will remember that next time. It is also an FAQ: http://cran.r-project.org/bin/windows/base/rw-FAQ.html#What-are-HOME-and-working-directories_003f -Robert Robert M. Flight, Ph.D. University of Louisville Bioinfo

Re: [Rd] location of check.Renviron on Windows

2012-02-01 Thread Dirk Eddelbuettel
On 1 February 2012 at 20:23, Uwe Ligges wrote: | | | On 01.02.2012 20:10, Robert M. Flight wrote: | > Doing package development on a Windows 7 machine, and I want to tell R | > check not to worry about the "suggested" packages. | > | > I realize this can be done using the ~/.R/check.Renviron fil

Re: [Rd] location of check.Renviron on Windows

2012-02-01 Thread Robert M. Flight
Thanks Simon, that did the ticket. Will remember that next time. -Robert Robert M. Flight, Ph.D. University of Louisville Bioinformatics Laboratory University of Louisville Louisville, KY PH 502-852-1809 (HSC) PH 502-852-0467 (Belknap) EM robert.fli...@louisville.edu EM rfligh...@gmail.com rober

Re: [Rd] location of check.Renviron on Windows

2012-02-01 Thread Simon Urbanek
On Feb 1, 2012, at 2:10 PM, Robert M. Flight wrote: > Doing package development on a Windows 7 machine, and I want to tell R > check not to worry about the "suggested" packages. > > I realize this can be done using the ~/.R/check.Renviron file, but > what directory corresponds to "~"? Is that su

Re: [Rd] location of check.Renviron on Windows

2012-02-01 Thread Uwe Ligges
On 01.02.2012 20:10, Robert M. Flight wrote: Doing package development on a Windows 7 machine, and I want to tell R check not to worry about the "suggested" packages. I realize this can be done using the ~/.R/check.Renviron file, but what directory corresponds to "~"? Is that supposed to be th

[Rd] location of check.Renviron on Windows

2012-02-01 Thread Robert M. Flight
Doing package development on a Windows 7 machine, and I want to tell R check not to worry about the "suggested" packages. I realize this can be done using the ~/.R/check.Renviron file, but what directory corresponds to "~"? Is that supposed to be the user directory? Or is it some other directory?

Re: [Rd] Crash in R using embedded.

2012-02-01 Thread Dirk Eddelbuettel
On 1 February 2012 at 10:24, Dave Pugmire wrote: | Hi, | I'm new to R, and am trying to embed R into another application. | I'm calling gev.fit() from the ismev package, and it is crashing somewhere | inside it. | gdb is not catching it, and valgrind is not showing any memory corruption | issues.

Re: [Rd] Crash in R using embedded.

2012-02-01 Thread oliver
Hello, On Wed, Feb 01, 2012 at 10:24:23AM -0500, Dave Pugmire wrote: > Hi, > I'm new to R, and am trying to embed R into another application. > I'm calling gev.fit() from the ismev package, and it is crashing somewhere > inside it. > gdb is not catching it, and valgrind is not showing any memory

Re: [Rd] Crash in R using embedded.

2012-02-01 Thread Duncan Murdoch
You posted this message already. If you didn't get any responses based on that posting, I think it means nobody has any suggestions beyond what you're already doing. Debugging is hard sometimes, even if you approach it in the right way. A common source of hard-to-find bugs is the R garbage c

[Rd] Crash in R using embedded.

2012-02-01 Thread Dave Pugmire
Hi, I'm new to R, and am trying to embed R into another application. I'm calling gev.fit() from the ismev package, and it is crashing somewhere inside it. gdb is not catching it, and valgrind is not showing any memory corruption issues. I suspect it's memory corruption, because it doesn't crash in