Re: [Rd] LAPACK libraries improperly linked

2010-11-14 Thread Ron Burns
Thank you for your help. With help from Dirk Eddelbuettel we found that I needed to explicitly install libatlas-base-dev. After doing this everything worked with no further fuss. Best Regards, Ron On 11/14/2010 05:12 PM, Davor Cubranic wrote: On November 14, 2010 10:05:24 am Ron Burn

Re: [Rd] problem building R from svn repo

2010-11-14 Thread Davor Cubranic
> > You should not run configure or make with sudo. If you need to > > install system-wide, you only need to run make install under sudo, > > like > > ./configure > > make > > sudo make install > > I thougt so, and did so first. But that generated other errors!, > which was killed by using sudo.

Re: [Rd] LAPACK libraries improperly linked

2010-11-14 Thread Davor Cubranic
On November 14, 2010 10:05:24 am Ron Burns wrote: > [ 41 ] (ron) ls /usr/lib/libatlas* > /usr/lib/libatlas.so.3gf@ > [ 42 ] (ron) ls /usr/lib/libf77blas* > /usr/lib/libf77blas.so.3gf@ > > so these are there and linked OK and there is no Rlapack. These are soft links. Could you do an 'l

Re: [Rd] LAPACK libraries improperly linked

2010-11-14 Thread Ron Burns
On 11/14/2010 12:05 PM, Dirk Eddelbuettel wrote: On 14 November 2010 at 10:05, Ron Burns wrote: | I am not sure if this is an R development problem or not. I am starting I think you were pretty close by looking at lapack-dev and blas-dev, but you missed atlas-dev. Simply do $ sudo apt-

[Rd] What is "R NEWS format"?

2010-11-14 Thread Sietse Brouwer
Dear list, I've found a few references 'R NEWS format' (see below), but nowhere a description of what this format *is*. Looking at examples on CRAN didn't help, either: as far as I saw conventions were all over the place. 5 example NEWS files (packages admittedly chosen for spread rather than sim

Re: [Rd] LAPACK libraries improperly linked

2010-11-14 Thread Dirk Eddelbuettel
On 14 November 2010 at 10:05, Ron Burns wrote: | I am not sure if this is an R development problem or not. I am starting | with completely clean OS and and installing the latest version of R | without trying to anything special but I am having trouble with the | LAPACK library linking when I tr

[Rd] LAPACK libraries improperly linked

2010-11-14 Thread Ron Burns
I am not sure if this is an R development problem or not. I am starting with completely clean OS and and installing the latest version of R without trying to anything special but I am having trouble with the LAPACK library linking when I try to build packages that require them. I thought perhap

Re: [Rd] problem building R from svn repo

2010-11-14 Thread Kjetil Halvorsen
see below. On Sat, Nov 13, 2010 at 10:18 PM, Kasper Daniel Hansen wrote: > Before make'ing you need to get the recommended packages.  I do (with > your paths) > ../svn/tools/sync-recommended > ../svn/tools/sync-recommended > I did install the recommended packages. > You should not run configure