Re: [Rd] Snow leopard ./configure "cannot compile a simple Fortran program"

2009-09-22 Thread Simon Urbanek
Jeff, On Sep 22, 2009, at 6:12 PM, Jeff Hamann wrote: I hope this is the place for this... Yes, indeed. I have to rebuild from scratch under Snow Leopard, and when I attempted to build R-2.9.1, I get the following results from ./ configure: checking how to get verbose linking output

[Rd] Snow leopard ./configure "cannot compile a simple Fortran program"

2009-09-22 Thread Jeff Hamann
I hope this is the place for this... I have to rebuild from scratch under Snow Leopard, and when I attempted to build R-2.9.1, I get the following results from ./ configure: checking how to get verbose linking output from fc... configure: WARNING: compilation failed checking for Fortran

Re: [Rd] Rcmdr package dependencies

2009-09-22 Thread Uwe Ligges
John Fox wrote: Dear Seth, -Original Message- From: Seth Falcon [mailto:s...@userprimary.net] Sent: September-22-09 5:13 PM To: Uwe Ligges Cc: John Fox; r-devel@r-project.org Subject: Re: [Rd] Rcmdr package dependencies * On 2009-09-22 at 20:16 +0200 Uwe Ligges wrote: no, this is no

Re: [Rd] Rcmdr package dependencies

2009-09-22 Thread John Fox
Dear Seth, > -Original Message- > From: Seth Falcon [mailto:s...@userprimary.net] > Sent: September-22-09 5:13 PM > To: Uwe Ligges > Cc: John Fox; r-devel@r-project.org > Subject: Re: [Rd] Rcmdr package dependencies > > * On 2009-09-22 at 20:16 +0200 Uwe Ligges wrote: > > no, this is not

Re: [Rd] Rcmdr package dependencies

2009-09-22 Thread Seth Falcon
* On 2009-09-22 at 20:16 +0200 Uwe Ligges wrote: > no, this is not possible. > > Consider your package A (or Rcmdr) suggests B that suggests C. > Then A::foo uses the function B::bar which only works if C::dep is > present. B works essentially without C but it requires C just to > make bar work. T

Re: [Rd] Rcmdr package dependencies

2009-09-22 Thread Uwe Ligges
John Fox wrote: Dear Uwe, -Original Message- From: Uwe Ligges [mailto:lig...@statistik.tu-dortmund.de] Sent: September-22-09 2:17 PM To: John Fox Cc: r-devel@r-project.org Subject: Re: [Rd] Rcmdr package dependencies John Fox wrote: Dear r-devel members, My Rcmdr package "depends

Re: [Rd] Rcmdr package dependencies

2009-09-22 Thread John Fox
Dear Gabor, At present, the Rcmdr package checks whether its dependencies are present and offers to install them if they are not. Also at present, it installs its dependencies with dep=TRUE, but that could be changed. I suppose that I could simply rely on this mechanism rather than have a separate

Re: [Rd] Rcmdr package dependencies

2009-09-22 Thread Gabor Grothendieck
To make it foolproof at Rcmdr's load time (i.e. in the .onLoad function) you could check whether RcmdrInstall was available (not necessarily loaded, just available). If not, then you could issue a message asking the user to install it. This would help the user avoid the situation where they insta

Re: [Rd] Rcmdr package dependencies

2009-09-22 Thread John Fox
Dear Gabor, I thought of this solution but rejected it, perhaps too hastily, because it seemed awkward. I suppose, however, that since the Rcmdr package would be unchanged, a user could choose to install it as at present with dependencies=TRUE, or alternatively install the RcmdrInstall package and

Re: [Rd] Rcmdr package dependencies

2009-09-22 Thread John Fox
Dear Uwe, > -Original Message- > From: Uwe Ligges [mailto:lig...@statistik.tu-dortmund.de] > Sent: September-22-09 2:17 PM > To: John Fox > Cc: r-devel@r-project.org > Subject: Re: [Rd] Rcmdr package dependencies > > > > John Fox wrote: > > Dear r-devel members, > > > > My Rcmdr package

Re: [Rd] Rcmdr package dependencies

2009-09-22 Thread Gabor Grothendieck
Create a package called RcmdrInstall, say, with no content and have it depend on Rcmdr. RcmdrInstall would have all packages as dependencies while Rcmdr would only have the essential packages as dependencies. Install RcmdrInstall. That would also force Rcmdr to be installed. Now issue: libr

Re: [Rd] Rcmdr package dependencies

2009-09-22 Thread Uwe Ligges
John Fox wrote: Dear r-devel members, My Rcmdr package "depends" on several other packages (tcltk, grDevices, utils, and car) and "suggests" a number of others (abind, aplpack, colorspace, effects, foreign, grid, Hmisc, lattice, leaps, lmtest, MASS, mgcv, multcomp, nlme, nnet, relimp, rgl, and

Re: [Rd] odd (erroneous?) results from gls

2009-09-22 Thread Uwe Ligges
timothy_hand...@nps.gov wrote: A couple weeks ago I posted a message on this topic to r-help, the response was that this seemed like odd behavior, and that I ought to post it to one of the developer lists. I posted to r-sig-mixed-models, but didn't get any response. So, with good intentions, I

Re: [Rd] cannot build R-devel (>= r49747)

2009-09-22 Thread Romain Francois
Thanks. Works for me also now. On 09/22/2009 06:17 PM, Duncan Murdoch wrote: I believe this is fixed now (as of r49786). The problem is that the parse code does bad things with the protection stack -- rather than pairing PROTECT with UNPROTECT, it does bulk unprotects by saving and restoring th

Re: [Rd] cannot build R-devel (>= r49747)

2009-09-22 Thread Duncan Murdoch
I believe this is fixed now (as of r49786). The problem is that the parse code does bad things with the protection stack -- rather than pairing PROTECT with UNPROTECT, it does bulk unprotects by saving and restoring the stack pointer -- and in the new code the ParseState.SrcFile ended up getti

[Rd] odd (erroneous?) results from gls

2009-09-22 Thread Timothy_Handley
A couple weeks ago I posted a message on this topic to r-help, the response was that this seemed like odd behavior, and that I ought to post it to one of the developer lists. I posted to r-sig-mixed-models, but didn't get any response. So, with good intentions, I decided to try posting once more,

[Rd] Rcmdr package dependencies

2009-09-22 Thread John Fox
Dear r-devel members, My Rcmdr package "depends" on several other packages (tcltk, grDevices, utils, and car) and "suggests" a number of others (abind, aplpack, colorspace, effects, foreign, grid, Hmisc, lattice, leaps, lmtest, MASS, mgcv, multcomp, nlme, nnet, relimp, rgl, and RODBC). The reason

Re: [Rd] A couple of suggestions: source function (package base)

2009-09-22 Thread Gabor Grothendieck
I would find that useful too particularly for running long output from Stangle. On Mon, Sep 21, 2009 at 9:22 PM, Jose Claudio Faria wrote: > Hi, > > I've been calling the function "source" (package base) from Tinn-R editor to > send files, marked blocks and selections to R interpreter because it

Re: [Rd] .Random.seed not found (PR#13963)

2009-09-22 Thread Duncan Murdoch
On 21/09/2009 1:25 PM, andreas.westf...@htw-dresden.de wrote: R 2.9.1 and 2.9.2 report "not found" when I try to save .Random.seed for later restore, however, the manual ?.Random.seed says that it still exists. .Random.seed is created the first time you use the random number generators. I'm g

Re: [Rd] cannot build R-devel (>= r49747)

2009-09-22 Thread Duncan Murdoch
On 22/09/2009 5:50 AM, Romain Francois wrote: On 09/22/2009 11:41 AM, Duncan Murdoch wrote: On 22/09/2009 5:30 AM, Romain Francois wrote: On 09/22/2009 11:25 AM, Peter Dalgaard wrote: Romain Francois wrote: However, this might be relevant about my setting, I have the "R_KEEP_PKG_SOURCE" envi

Re: [Rd] cannot build R-devel (>= r49747)

2009-09-22 Thread Romain Francois
On 09/22/2009 11:41 AM, Duncan Murdoch wrote: On 22/09/2009 5:30 AM, Romain Francois wrote: On 09/22/2009 11:25 AM, Peter Dalgaard wrote: Romain Francois wrote: However, this might be relevant about my setting, I have the "R_KEEP_PKG_SOURCE" environment variable set to "yes". And if I set it

Re: [Rd] cannot build R-devel (>= r49747)

2009-09-22 Thread Duncan Murdoch
On 22/09/2009 5:30 AM, Romain Francois wrote: On 09/22/2009 11:25 AM, Peter Dalgaard wrote: Romain Francois wrote: However, this might be relevant about my setting, I have the "R_KEEP_PKG_SOURCE" environment variable set to "yes". And if I set it to "no" it builds correctly. AHA! Yes, that ma

Re: [Rd] cannot build R-devel (>= r49747)

2009-09-22 Thread Romain Francois
On 09/22/2009 11:25 AM, Peter Dalgaard wrote: Romain Francois wrote: However, this might be relevant about my setting, I have the "R_KEEP_PKG_SOURCE" environment variable set to "yes". And if I set it to "no" it builds correctly. AHA! Yes, that makes sense R_KEEP_PKG_SOURCE=yes make breaks

Re: [Rd] cannot build R-devel (>= r49747)

2009-09-22 Thread Peter Dalgaard
Romain Francois wrote: > However, this might be relevant about my setting, I have the > "R_KEEP_PKG_SOURCE" environment variable set to "yes". And if I set it > to "no" it builds correctly. AHA! Yes, that makes sense R_KEEP_PKG_SOURCE=yes make breaks for me too with the unprotect_ptr message (S

[Rd] typo in r-devel/R/src/library/base/man/files.Rd

2009-09-22 Thread Stephen Eglen
files.Rd has the following typo, line 57: LIBK points to an actual file ... should be LINK Stephen __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] A couple of suggestions: source function (package base)

2009-09-22 Thread Jose Claudio Faria
Hi, I've been calling the function "source" (package base) from Tinn-R editor to send files, marked blocks and selections to R interpreter because it avoids a lot of problems related with input/output synchronization in the Rgui output! The new RGedit plugin is also using this function in this wa

[Rd] .Random.seed not found (PR#13963)

2009-09-22 Thread andreas . westfeld
R 2.9.1 and 2.9.2 report "not found" when I try to save .Random.seed for later restore, however, the manual ?.Random.seed says that it still exists. -- Andreas Westfeld, 0432 01CC F511 9E2B 0B57 5993 0B22 98F8 4AD8 EEEA HTW Dresden, Fakultät Informatik/Mathematik Informatikrecht/Informationssicher

[Rd] Ubuntu Hardy python-rpy package missing _rpy2092 (PR#13962)

2009-09-22 Thread dennisr
Full_Name: Dennis Ristuccia Version: R version 2.9.2 (2009-08-24) OS: Ubuntu Hardy 8.04 Submission from: (NULL) (18.157.249.21) Hi guys, I'm running into an issue with the python-rpy ubuntu hardy package. Heres the output: r...@tak ~# python Python 2.5.2 (r252:60911, Jul 22 2009, 15:35:03) [G

Re: [Rd] cannot build R-devel (>= r49747)

2009-09-22 Thread Romain Francois
On 09/22/2009 09:17 AM, Peter Dalgaard wrote: Romain Francois wrote: Hello, I've tried several times yesterday to build R-devel and I consistently get this error when I "make" : mkdir -p -- ../../../library/base/R make[3]: Leaving directory `/tmp/R-devel/src/library/profile' make[3]: Entering

Re: [Rd] cannot build R-devel (>= r49747)

2009-09-22 Thread Peter Dalgaard
Romain Francois wrote: Hello, I've tried several times yesterday to build R-devel and I consistently get this error when I "make" : mkdir -p -- ../../../library/base/R make[3]: Leaving directory `/tmp/R-devel/src/library/profile' make[3]: Entering directory `/tmp/R-devel/src/library/base' bui