[Rd] Wishlist for plot.lm() (PR#13560)

2009-02-28 Thread john . maindonald
Full_Name: John Maindonald Version: R-2.8.1 OS: MacOS X 10.5.6 Submission from: (NULL) (203.173.3.75) The following code demonstrates an annoyance with plot.lm(): library(DAAGxtras) x11(width=3.75, height=4) nihills.lm <- lm(log(time) ~ log(dist) + log(climb), data = nihills) plot(nihills.lm, wh

[Rd] Help on Making R Packages

2009-02-28 Thread Romina Rengel
I'm trying to make a R package for a work in university. It´s my first time and i made some modifications on Pam algorithm that is included on cluster package. So before run Rcmd build command i made the next things: 1- I modified pam.c and cluster.h code. I added two new arguments on pam. 2- I mod

Re: [Rd] Cannot install some packages (PR#13559)

2009-02-28 Thread ligges
robert.pe...@myfairpoint.net wrote: > Full_Name: Robert Peck > Version: 2.8.1 > OS: XP Home > Submission from: (NULL) (71.168.114.196) > > > There are some packages that I cannot install on my PC. I doubt this is a bug. Some or all packages? Is there some pattern? Are you installing with suff

[Rd] Cannot install some packages (PR#13559)

2009-02-28 Thread robert . peck1
Full_Name: Robert Peck Version: 2.8.1 OS: XP Home Submission from: (NULL) (71.168.114.196) There are some packages that I cannot install on my PC. Example: LearnBayes The following output is sent back: > utils:::menuInstallPkgs() trying URL 'http://www.ibiblio.org/pub/languages/R/CRAN/bin/win

Re: [Rd] Unexpected side effect of the ":::" operator on the value of isGeneric

2009-02-28 Thread Wolfgang Huber
Dear Martin name masking is a separate issue, which I do not want to explore here. If one accepts the notion that unrelated generics of the same name may exist in different namespaces (user confusion aside, I don't see a technical reason why one shouldn't), then I find the behaviour of R in the b

Re: [Rd] Unexpected side effect of the ":::" operator on the value of isGeneric

2009-02-28 Thread Martin Maechler
> "Wolfi" == Wolfgang Huber > on Wed, 25 Feb 2009 18:15:03 + writes: Wolfi> Hi, Wolfi> when running the following on a fresh R, Wolfi> library("IRanges") Wolfi> annotation Wolfi> showMethods("annotation") Wolfi> Biobase:::annotation Wolfi> showMethods