Re: [Rd] New package test results available

2009-02-10 Thread Thomas Petzoldt
Thomas Petzoldt wrote: Prof Brian Ripley schrieb: We've added a column at http://cran.r-project.org/web/checks/check_summary.html of test results using the Sun Studio compiler: it is intended that these will be updated weekly. The Sun Studio compiler is that used on Solaris: these runs were

[Rd] PPR crash (PR#13517)

2009-02-10 Thread h . miller
Full_Name: Hugh Miller Version: 2.8.1 OS: XP Submission from: (NULL) (128.250.24.101) Hi there, I've been looking at approaches that use the projection pursuit regression function fairly (ppr) heavily, and have discovered that it crashes my R system on occasion. It only happens with the inputs a

Re: [Rd] Variable/function namespaces WAS: Bug in subsetting data frame (PR#13515)

2009-02-10 Thread Duncan Murdoch
On 10/02/2009 12:07 PM, Stavros Macrakis wrote: On Tue, Feb 10, 2009 at 10:11 AM, Duncan Murdoch wrote: Stavros Macrakis wrote: On Tue, Feb 10, 2009 at 8:31 AM, Duncan Murdoch wrote: The evaluator recognizes the context of usage and will get the function for a function call Can you point

[Rd] survival package

2009-02-10 Thread Terry Therneau
R core team - It took far, far longer than I anticipated, but I have finally finished the next release of the survival code. Primary changes 1. The source has been migrated to Rforge. This will now be the primary source. I've used SCCS -> rcs -> cvs and now svn. Further changes will be so

Re: [Rd] Bug in subsetting data frame (PR#13515)

2009-02-10 Thread William Dunlap
> -Original Message- > From: r-devel-boun...@r-project.org > [mailto:r-devel-boun...@r-project.org] On Behalf Of Duncan Murdoch > Sent: Tuesday, February 10, 2009 7:12 AM > To: Stavros Macrakis > Cc: xinlee...@stat.math.ethz.ch; r-de...@stat.math.ethz.ch > Subject: Re: [Rd] Bug in subsetti

[Rd] Variable/function namespaces WAS: Bug in subsetting data frame (PR#13515)

2009-02-10 Thread Stavros Macrakis
On Tue, Feb 10, 2009 at 10:11 AM, Duncan Murdoch wrote: > Stavros Macrakis wrote: >> On Tue, Feb 10, 2009 at 8:31 AM, Duncan Murdoch wrote: >>> The evaluator recognizes the context of usage and will get the >>> function for a function call >> Can you point me to chapter and verse in the langua

Re: [Rd] Italics in svg output display as bold

2009-02-10 Thread Prof Brian Ripley
Sorry, but package Cairo is not what we were talking about here, and problem with that on Windowsare known (to several of us at least). The report was about the svg() device in Unix-alike R. Reports on the Cairo package need to be sent to its maintainer (Simon Urbanek) and I'e removed the mis

Re: [Rd] Italics in svg output display as bold (PR#13463)

2009-02-10 Thread Xavier Robin
Yan Wong-3 wrote: > > On 22 Jan 2009, at 11:58, Brian D Ripley wrote: > >> It is a bug on your system: this is done by cairographics, and I >> suspect that the version you have is broken (or possibly your viewer). >> I'll attach the version I get, which does display in italics on my >> syst

Re: [Rd] Logical Error? (PR#13516)

2009-02-10 Thread Olaf Mersmann
Excerpts from camey's message of Tue Feb 10 15:55:04 +0100 2009: > Using the commands bellow I expected that the answer is TRUE, but it is FALSE! > > P_exposicao=.9 > (1-P_exposicao)==.1 Look at the difference of the two, it is much smaller than .Machine$double.eps on my computer. This is not a

Re: [Rd] Logical Error? (PR#13516)

2009-02-10 Thread Josh Ulrich
This is not a bug. Please do read the FAQ before posting and creating work for others. http://cran.r-project.org/doc/FAQ/R-FAQ.html#R-Bugs http://cran.r-project.org/doc/FAQ/R-FAQ.html#Why-doesn_0027t-R-think-these-numbers-are-equal_003f Joshua Ulrich -- http://quantemplation.blogspot.com On Tu

[Rd] Logical Error? (PR#13516)

2009-02-10 Thread camey
Full_Name: Suzi Alves Camey Version: 2.7.2 OS: Submission from: (NULL) (143.54.37.254) Using the commands bellow I expected that the answer is TRUE, but it is FALSE! P_exposicao=.9 (1-P_exposicao)==.1 __ R-devel@r-project.org mailing list https://sta

Re: [Rd] Bug in subsetting data frame (PR#13515)

2009-02-10 Thread Duncan Murdoch
Stavros Macrakis wrote: On Tue, Feb 10, 2009 at 8:31 AM, Duncan Murdoch wrote: Stavros Macrakis wrote: It is a bad idea to set data.frame <- xxx since R has a single namespace for functions and variables. That's not quite accurate. R mixes functions and variables in namespa

Re: [Rd] Bug in subsetting data frame (PR#13515)

2009-02-10 Thread Stavros Macrakis
On Tue, Feb 10, 2009 at 8:31 AM, Duncan Murdoch wrote: > Stavros Macrakis wrote: > >> It is a bad idea to set data.frame <- xxx since R has a single >> namespace for functions and variables. >> >> > That's not quite accurate. R mixes functions and variables in namespaces, > but it has lots of nam

Re: [Rd] Bug in subsetting data frame (PR#13515)

2009-02-10 Thread Wacek Kusnierczyk
Wacek Kusnierczyk wrote: > Stavros Macrakis wrote: > >> Don't know if this is the problem, but >> >> It is a bad idea to set data.frame <- xxx since R has a single >> namespace for functions and variables. >> >> >> > > > the issue is, if you use a name as an operator, it's the first

Re: [Rd] Bug in subsetting data frame (PR#13515)

2009-02-10 Thread Duncan Murdoch
Stavros Macrakis wrote: Don't know if this is the problem, but It is a bad idea to set data.frame <- xxx since R has a single namespace for functions and variables. That's not quite accurate. R mixes functions and variables in namespaces, but it has lots of namespaces, and it usually do

Re: [Rd] Bug in subsetting data frame (PR#13515)

2009-02-10 Thread Wacek Kusnierczyk
Stavros Macrakis wrote: > Don't know if this is the problem, but > > It is a bad idea to set data.frame <- xxx since R has a single > namespace for functions and variables. > > it doesn't seem to be the problem. c = c(0) c # 0, not the function `c` c(1) # 1, not an error from application o

Re: [Rd] Bug in subsetting data frame (PR#13515)

2009-02-10 Thread Wacek Kusnierczyk
Stavros Macrakis wrote: > Don't know if this is the problem, but > > It is a bad idea to set data.frame <- xxx since R has a single > namespace for functions and variables. > > it doesn't seem to be the problem. c = c(0) c # 0, not the function `c` c(1) # 1, not an error from application o

Re: [Rd] Bug in subsetting data frame (PR#13515)

2009-02-10 Thread Stavros Macrakis
Don't know if this is the problem, but It is a bad idea to set data.frame <- xxx since R has a single namespace for functions and variables. -s On 2/10/09, xinlee...@stat.math.ethz.ch wrote: > Full_Name: Xin Lee > Version: 2.8.0 > OS: Windows XP > Submission from: (NULL) (193.200.15

Re: [Rd] Bug in subsetting data frame (PR#13515)

2009-02-10 Thread Thomas Lumley
On Tue, 10 Feb 2009 xinlee...@stat.math.ethz.ch wrote: I discover annoying bug in subsetting data frame. Here is reproducable examples: These are not bugs. data.frame <- data.frame(x = runif(5), y = runif(5), row.names = c('a','b','c','d','e') subset <- data.frame['x'] subset['a',] wor

[Rd] Bug in subsetting data frame (PR#13515)

2009-02-10 Thread xinlee883
Full_Name: Xin Lee Version: 2.8.0 OS: Windows XP Submission from: (NULL) (193.200.150.23) Dear developer I discover annoying bug in subsetting data frame. Here is reproducable examples: > data.frame <- data.frame(x = runif(5), y = runif(5), row.names = c('a','b','c','d','e') > subset <- data.

[Rd] \usage without \alias

2009-02-10 Thread Christophe Genolini
Hi the list, I am checking a package and I get a warnings : --- 8< Objects in \usage without \alias in documentation object 'plot,Calinski' --- 8< 'Calinski' is a S4 class and I define a S4 method for ploting it. Here is my plotCalinski.rd file : --- 8< \name{plot,Calinski} \a

Re: [Rd] New package test results available

2009-02-10 Thread Martin Elff
Dear Professor Ripley, as you pointed out, package 'memisc' caused a compilation error with the Sun Studio compiler because of gcc-specific compilation flags. The obvious reason was that the 'src' directory had a 'Makevars' file containing "PKGC_FLAGS="-Wall -pedantic". In the new revision of