Thank you, will be fixed in the next release of nlme (not yet scheduled,
as everythign is code frozen for the release of R 2.5.1 tomorrow).
On Tue, 26 Jun 2007, Andrzej Galecki wrote:
>
> Two attachments:
>
> 1. getVarCovBugReport.R - Rcode with an example illustrating the problem and
> how to
On Tue, 26 Jun 2007, [EMAIL PROTECTED] wrote:
> Hi,
>
> The R input/output after the following paragraph is from a session with
> version.string R version 2.4.0 Patched (2006-11-23 r39958).
Which is not recent, but this is unchanged since.
The problem is the definition:
> `formals<-`
function (
On Tue, 26 Jun 2007, Benjamin Tyner wrote:
> R-devel,
>
> When I run the following code on the attached file,
>
> tmp <- scan("C:/temp.csv",
> what=list("character","numeric"),
> sep=",")
>
> Then tmp[[2]] is a character vector. My impression from the help file
> is that it sho
In ?ks.test
"if the sample size if less than 100 in"
should be
"if the sample size is less than 100 in"
Ben Bolker
--please do not edit the information below--
Version:
platform = i486-pc-linux-gnu
arch = i486
os = linux-gnu
system = i486, linux-gnu
status =
major = 2
minor = 5.0
> "JMC" == John Chambers <[EMAIL PROTECTED]>
> on Tue, 26 Jun 2007 14:47:25 -0400 writes:
JMC> Martin Maechler wrote:
>>> "MM" == Martin Maechler <[EMAIL PROTECTED]>
>>> on Sat, 23 Jun 2007 00:36:43 +0200 writes:
>>>
>>
> {on R-help}
>>
>> [..
> "BDR" == Prof Brian Ripley <[EMAIL PROTECTED]>
> on Tue, 26 Jun 2007 18:38:27 +0100 (BST) writes:
BDR> Remember that you only get S4 dispatch on Math for S4
BDR> generics. log10 is not an S4 generic until you make it
BDR> one. From the help page
BDR> Note: cu
This is a multi-part message in MIME format.
--000206090008050103050209
Content-Type: text/plain; charset=ISO-8859-1; format=flowed
Content-Transfer-Encoding: 7bit
Two attachments:
1. getVarCovBugReport.R - Rcode with an example illustrating the
problem and how to fix it
2. getVarC
Hi,
The R input/output after the following paragraph is from a session with
version.string R version 2.4.0 Patched (2006-11-23 r39958).
The last element, x$c, of x has no value and after the assignment of x to the
formals of f, x$c does not become a formal argument of f. The second assignment
doe
Martin Maechler wrote:
>> "MM" == Martin Maechler <[EMAIL PROTECTED]>
>> on Sat, 23 Jun 2007 00:36:43 +0200 writes:
>>
>
> {on R-help}
>
> [.]
> [.]
>
> >> Duncan Murdoch
>
> DM> You might have better luck with
>
On Tue, 26 Jun 2007, Iago Mosqueira wrote:
> Dear all,
>
> I would appreciate some help understanding the following behaviour
> when stats4::mle is called inside a function. mle seems to look for
> its arguments in R_GlobalEnv and not the environment from which it is
> called.
It is your function
Remember that you only get S4 dispatch on Math for S4 generics.
log10 is not an S4 generic until you make it one. From the help page
Note: currently those members which are not primitive functions
must have been converted to S4 generic functions (preferably
_before_ setting an S
> "MM" == Martin Maechler <[EMAIL PROTECTED]>
> on Sat, 23 Jun 2007 00:36:43 +0200 writes:
{on R-help}
[.]
[.]
>> Duncan Murdoch
DM> You might have better luck with
DM> log1p(tasa)
MM> {very good point, thank you, D
On 6/26/2007 9:07 AM, Martin Maechler wrote:
>> "BDR" == Prof Brian Ripley <[EMAIL PROTECTED]>
>> on Tue, 26 Jun 2007 10:51:03 +0100 (BST) writes:
>
> BDR> You have three summary() functions here:
> >> library(RMySQL)
> BDR> Loading required package: DBI
> >> library(lm
Hi Ben,
On Tue, Jun 26, 2007 at 11:58:35AM -0400, Benjamin Tyner wrote:
> R-devel,
>
> When I run the following code on the attached file,
>
> tmp <- scan("C:/temp.csv",
>what=list("character","numeric"),
>sep=",")
>
> Then tmp[[2]] is a character vector. My impression f
How embarrassing -- works like a charm.
On 6/26/07, Greg Snow <[EMAIL PROTECTED]> wrote:
> The what argument looks at what the elements are, not the word they say.
> Try this:
>
> > tmp <- scan("C:/temp.csv",
> > what=list("",0),
> > sep=",")
>
> Hope this helps,
>
> --
> G
Dear all,
I would appreciate some help understanding the following behaviour
when stats4::mle is called inside a function. mle seems to look for
its arguments in R_GlobalEnv and not the environment from which it is
called.
library(stats4)
lkhd <- function(alpha=1, beta=0.1, sigma=0.1)
-
The what argument looks at what the elements are, not the word they say.
Try this:
> tmp <- scan("C:/temp.csv",
> what=list("",0),
> sep=",")
Hope this helps,
--
Gregory (Greg) L. Snow Ph.D.
Statistical Data Center
Intermountain Healthcare
[EMAIL PROTECTED]
(801) 408-811
R-devel,
When I run the following code on the attached file,
tmp <- scan("C:/temp.csv",
what=list("character","numeric"),
sep=",")
Then tmp[[2]] is a character vector. My impression from the help file
is that it should be a numeric as specified by 'what'
sessionInfo()
R
I would like to reply to the following email from May in the thread
[Rd] R 2.5.0 refuses to print enough digits to recover exact floating point
values
On Wed, May 23, 2007 at 06:32:36PM +0100, Prof Brian Ripley wrote:
> I think this is a bug in the MacOS X runtime. I've checked the C99
> stand
> "BDR" == Prof Brian Ripley <[EMAIL PROTECTED]>
> on Tue, 26 Jun 2007 10:51:03 +0100 (BST) writes:
BDR> You have three summary() functions here:
>> library(RMySQL)
BDR> Loading required package: DBI
>> library(lme4)
BDR> Loading required package: Matrix
BDR> Lo
What is mystifying is that the issue was not present in previous versions, =
so appropriate code already existed.
However, I agree that there seem to be a couple of additional issues that =
I had missed. =20
I am perfectly happy to look at this again myself, though, and provide =
extended code; w
On 6/26/2007 8:16 AM, [EMAIL PROTECTED] wrote:
> Full_Name: Steve Ellison
> Version: 2.4.1
> OS: Windows, Linux
> Submission from: (NULL) (194.73.101.157)
>
>
> bxp() allows specifcation of box locations with at=, but neither adjusts xlim=
> to fit at nor does it respect xlim provided explicitly.
On 6/26/2007 8:16 AM, [EMAIL PROTECTED] wrote:
> Full_Name: Steve Ellison
> Version: 2.4.1
> OS: Windows, Linux
> Submission from: (NULL) (194.73.101.157)
That version is obsolete, but this problem is still present in R-devel.
I'll take a look.
Duncan Murdoch
>
>
> bxp() allows specifcation
Full_Name: Steve Ellison
Version: 2.4.1
OS: Windows, Linux
Submission from: (NULL) (194.73.101.157)
bxp() allows specifcation of box locations with at=, but neither adjusts xlim=
to fit at nor does it respect xlim provided explicitly.
This is because bxp() now includes explicit xlim as c(0.5, n+
You have three summary() functions here:
> library(RMySQL)
Loading required package: DBI
> library(lme4)
Loading required package: Matrix
Loading required package: lattice
> find("summary")
[1] "package:Matrix" "package:DBI""package:base"
and this is simply a namespace issue (note the environ
Thank you, Dale.
I think you've revealed a bug in the method dispatch mechanism.
I'm adding here a script which confirms your finding and add
slightly more insight:
library(RMySQL)
library(lme4)
data(sleepstudy)
fm1 <- lmer(Reaction ~ Days + (Days|Subject), sleepstudy)
## MM: First save, then p
On Mon, 25 Jun 2007, [EMAIL PROTECTED] wrote:
> I am using R2.5 under Windows.
I presume you mean 2.5.0 (there is no R2.5: see the posting guide). But
which version of nlme, which is the relevant fact here? The R posting
guide suggests showing the output of sessionInfo() to establish the
env
You have not told us your OS nor version of R.
The file src/nmath/standalone/README in the R sources will either tell you
how to do this or point you to the current documentation (depending on the
R version).
At a guess (since you use 'project' and don't have the correct case on
your file name
Hello,
I am using R2.5 under Windows.
Looks like the following statement
vars <- (obj$sigma^2)*vw
in getVarCov.gls method (nlme package) needs to be replaced with:
vars <- (obj$sigma*vw)^2
With best regards
Andrzej Galecki
Douglas Bates wrote:
>I'm not sure when the getVarCov.
I'm writing a C program and I'd like to include in it
some R routine (quantile functions, typically).
I found the functions I have to use (qnorm.c qbeta.c
ecc) e some include (nmath.h rmath.h ecc).
But I can't compile the project, I receive linker
error.
Somebody can help me?
I say, if I want
Full_Name: Dale Barr
Version: 2.5.1 (patched)
OS: Ubuntu linux x86_64
Submission from: (NULL) (138.23.70.108)
When RMySQL is loaded in before lme4, the summary() function for lmer objects in
the lme4 packages produces the following error:
Error in printMer(object) : no slot of name "status" for
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