R has a sparse matrix package called Matrix. Maybe with
that you don't need any C?
On 5/12/06, Terry Therneau <[EMAIL PROTECTED]> wrote:
> I've created some Splus code for a microarray problem that
>- needed to be in C, to take advantage of some sparse matrix
> properties
>- use
I've created some Splus code for a microarray problem that
- needed to be in C, to take advantage of some sparse matrix
properties
- uses a cholesky decompostion as part of the computation
For the cholesky, I used the cholesky2 routine, which is a part of the
survival library.
On Fri, 12 May 2006, Sheth, Jagat K wrote:
> Thanks, that worked. Make finished without any errors on the
> R-patched_2006-05-10.
>
> To get R-patched_2006-05-10 to pass make check on the AIX 5.2 here I added
> $(LIBM) as you suggested in the other posting for R-2.2.1 to the end of
> R_X11_la_L
Thanks, that worked. Make finished without any errors on the
R-patched_2006-05-10.
To get R-patched_2006-05-10 to pass make check on the AIX 5.2 here I added
$(LIBM) as you suggested in the other posting for R-2.2.1 to the end of
R_X11_la_LIBADD and vfonts_la_LIBADD in the X11 and vfonts modul
[EMAIL PROTECTED] writes:
> Full_Name: Patrick Hodgson
> Version: 2.0
> OS: solaris 2.9
> Submission from: (NULL) (65.94.128.161)
>
>
> The value reported for the parameter W in the function wilcox.exact appears to
> be incorrect. I have checked the reference in the help file for this function
Full_Name: Patrick Hodgson
Version: 2.0
OS: solaris 2.9
Submission from: (NULL) (65.94.128.161)
The value reported for the parameter W in the function wilcox.exact appears to
be incorrect. I have checked the reference in the help file for this function
(Myles & Hollander 1973, as well as 2nd ed.
On Fri, 12 May 2006, Bjørn-Helge Mevik wrote:
In the "old days", one way of speeding up matrix calculations was to
drop the dimnames of the matrices prior to the calculations, i.e.,
dimnames(X) <- NULL. I distinctly remember that this could have a
great impact at least in Splus 3.x (under UNIX/
I think rather you want to add $(LIBM) to the end of ...la_LIBADD.
We've seen things like this before, but OTOH people have succeeded in
building R-2.2.1 on AIX 5.2/3.
On Fri, 12 May 2006, Sheth, Jagat K wrote:
>
> I am trying to get R-2.2.1 to pass make check on an AIX 5.2 at work (I know
> R
We've seen something almost identical before. Looks like fcntl is
redefining open (and not open()). At the top of the file is
#ifdef HAVE_FCNTL_H
# include
#endif
Insert
#undef open
in there.
On Fri, 12 May 2006, Sheth, Jagat K wrote:
> I am encountering a make error on an AIX 5.2 with R
In the "old days", one way of speeding up matrix calculations was to
drop the dimnames of the matrices prior to the calculations, i.e.,
dimnames(X) <- NULL. I distinctly remember that this could have a
great impact at least in Splus 3.x (under UNIX/Linux).
I just did a small, informal test of thi
I am encountering a make error on an AIX 5.2 with R-2.3.0 and
R-patched_2006-05-10 after successfully configuring them using gcc-4.1.0, gnu
make, and the following configure options
CC=/usr/local/bin/gcc
F77=/usr/local/bin/gfortran
CXX=/usr/local/bin/g++
MAIN_LDFLAGS=-Wl,-brtl
SHLIB_LDFLAGS=
I am trying to get R-2.2.1 to pass make check on an AIX 5.2 at work (I know
R-2.2.1 is not the latest release, but I encountered make errors in my attempts
to install either R-2.3.0 or the R-patched_2006-05-10 on the version of AIX I
am on. I will post those errors in a separate posting from th
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