Re: [Rd] R-2.2.0 Compile problem on Slackware 10.2

2005-11-04 Thread R S Ananda Murthy
Dear HTL, Thanks for your help. I reinstalled kernel-headers-2.4.31 as mentioned by you. Now it compiled without any errors. Thanks again. Regards, Anand Hin-Tak Leung wrote: > Your system is badly screwed up. On my Slackware 10.2, > /usr/include/asm/errno.h is just a plain file and doesn't >

Re: [Rd] clarification of library/require semantics

2005-11-04 Thread Prof Brian Ripley
On Fri, 4 Nov 2005, Robert Gentleman wrote: > Recently I have added a lib.loc argument to require, so that > it is more consistent with library. However, there are some oddities > that folks have pointed out, and we do not have a documented description > of the semantics for what should happen whe

Re: [Rd] Classification Trees and basic Random Forest pkg using t ree structures in C

2005-11-04 Thread Liaw, Andy
> From: Hin-Tak Leung > > Izmirlian, Grant (NIH/NCI) wrote: > > > The only interesting feature is that the tree structure has been > > implemented in C. Its a neater way to carry stuff around and I am > > guessing would make future implementation easier. > > > > Because of its inherent redundan

Re: [Rd] Classification Trees and basic Random Forest pkg using tree structures in C

2005-11-04 Thread Izmirlian, Grant \(NIH/NCI\)
Hello Hin-Tak: Thanks for your interest. This is just a short not to tell you and others that the URL idea is a good one. This will take a few days at our organization. When its available I will post again to this thread. In the meantime, I will will send copies directly to those interested. So fa

[Rd] clarification of library/require semantics

2005-11-04 Thread Robert Gentleman
Recently I have added a lib.loc argument to require, so that it is more consistent with library. However, there are some oddities that folks have pointed out, and we do not have a documented description of the semantics for what should happen when the lib.loc parameter is provided. Proposal:

Re: [Rd] R-2.2.0 Compile problem on Slackware 10.2

2005-11-04 Thread Hin-Tak Leung
Your system is badly screwed up. On my Slackware 10.2, /usr/include/asm/errno.h is just a plain file and doesn't include anything else, unlike yours, which seems to look for "asm-generic/errno.h". The package you need to re-install is "kernel-headers-2.4.31-i386-1". It is part of the d series, on

Re: [Rd] Classification Trees and basic Random Forest pkg using tree structures in C

2005-11-04 Thread Hin-Tak Leung
Izmirlian, Grant (NIH/NCI) wrote: > The only interesting feature is that the tree structure has been > implemented in C. Its a neater way to carry stuff around and I am > guessing would make future implementation easier. > > Because of its inherent redundancy from the users standpoint, it > isn'

Re: [Rd] R-2.2.0 Compile problem on Slackware 10.2

2005-11-04 Thread Prof Brian Ripley
This an error in a standard system header file /usr/include/errno.h, not something we can help with. However, is --build=i486-slackware-linux actually correct? Our manuals do not suggest you specify --build, and if incorrect it might just explain this. On Fri, 4 Nov 2005, R S Ananda Murthy wr

[Rd] R-2.2.0 Compile problem on Slackware 10.2

2005-11-04 Thread R S Ananda Murthy
Hello, I am trying to compile R-2.2.0 on Slackware 10.2. I did ./configure --prefix=/usr --build=i486-slackware-linux. It went off without any problem and gave this configure status: R is now configured for i486-slackware-linux-gnu Source directory: . Installation directory:/u

Re: [Rd] shared-mime-info (PR#8278)

2005-11-04 Thread Peter Dalgaard
Paul Roebuck <[EMAIL PROTECTED]> writes: > On Fri, 4 Nov 2005, Peter Dalgaard wrote: > > > Vaidotas Zemlys <[EMAIL PROTECTED]> writes: > > > > > [SNIP] > > > > > > > Also > > > > 6. Rprofile files .Rprofile or Rprofile. > > > > .Renviron? Yes, but you seem to have forgotten to keep r-devel in t

[Rd] Classification Trees and basic Random Forest pkg using tree structures in C

2005-11-04 Thread Izmirlian, Grant \(NIH/NCI\)
Hello R-devel: I have written a package, called "woods", that does classification trees (R function CT), and currently, only the most basic functionality of Random Forest, e.g. bagged trees with choices about sample size, with/without replacement, size of (random) subset of covariates drawn when n

Re: [Rd] Changes to environments in R-devel

2005-11-04 Thread Prof Brian Ripley
As a followup, these changes have some impacts on already installed packages, most likely including all those using lazy-loading or saved images. If you are building from a checked-out version of R you will need to trigger re-installation of the recommended packages. Unix users can do that by

[Rd] dgamma error condition?

2005-11-04 Thread Ben Bolker
There's an apparent inconsistency between the behavior of d(pqr)gamma and other distribution functions for "bad" parameter values. Specifically, most distributions give NaN and a warning for bad parameters (e.g. probabilities <0 or >1). In contrast, d(pqr)gamma actually gives an error and sto

Re: [Rd] shared-mime-info (PR#8278)

2005-11-04 Thread p . dalgaard
Vaidotas Zemlys <[EMAIL PROTECTED]> writes: > Hi, > > On 04 Nov 2005 13:51:56 +0100, Peter Dalgaard <[EMAIL PROTECTED]> wrote: > > > One further thought about this: > > > > On SUSE, > > > > rpm -qif /usr/share/mime/ > > > > points at > > > > http://www.freedesktop.org/wiki/Software_2fshared_2dmi

Re: [Rd] shared-mime-info (PR#8278)

2005-11-04 Thread Peter Dalgaard
Vaidotas Zemlys <[EMAIL PROTECTED]> writes: > Hi, > > On 04 Nov 2005 13:51:56 +0100, Peter Dalgaard <[EMAIL PROTECTED]> wrote: > > > One further thought about this: > > > > On SUSE, > > > > rpm -qif /usr/share/mime/ > > > > points at > > > > http://www.freedesktop.org/wiki/Software_2fshared_2dmi

Re: [Rd] Alpha and Beta testing of R versions

2005-11-04 Thread Simon Urbanek
On Nov 4, 2005, at 6:58 AM, Prof Brian Ripley wrote: > Martin's point is generally very valid, but in the case of the > 2.2.0 release remarkably few of the bugs found since release were > new in 2.2.0. > One thing we have learnt is that none of the testers seem to look > at HTML help (which

Re: [Rd] shared-mime-info (PR#8278)

2005-11-04 Thread Vaidotas Zemlys
Hi, On 04 Nov 2005 13:51:56 +0100, Peter Dalgaard <[EMAIL PROTECTED]> wrote: > One further thought about this: > > On SUSE, > > rpm -qif /usr/share/mime/ > > points at > > http://www.freedesktop.org/wiki/Software_2fshared_2dmime_2dinfo > > So I guess that the proper tree to bark at is the upstrea

Re: [Rd] shared-mime-info (PR#8278)

2005-11-04 Thread Peter Dalgaard
[EMAIL PROTECTED] writes: > Hi, > > On 03 Nov 2005 12:41:53 +0100, Peter Dalgaard <[EMAIL PROTECTED]> wr= > ote: > > [EMAIL PROTECTED] writes: > > > > > We do not usually put features in R which are specific to just some > > > distributions of some OSes, and in this case to one editor on those. >

Re: [Rd] Alpha and Beta testing of R versions

2005-11-04 Thread Prof Brian Ripley
Martin's point is generally very valid, but in the case of the 2.2.0 release remarkably few of the bugs found since release were new in 2.2.0. One thing we have learnt is that none of the testers seem to look at HTML help (which accounts for 2 of the 4 2.2.0-only bugs I counted). What we need mo

[Rd] Alpha and Beta testing of R versions

2005-11-04 Thread David Meyer
[...] > Maybe we (the R-foundation) should give serious thoughts to > offer prizes for valid bug reports during alpha and beta > testing. These could include > - Reduced fee for 'useR' and 'DSC' conferences > - being listed as helpful person in R's 'THANKS' file > {but that may not entice those

[Rd] Alpha and Beta testing of R versions

2005-11-04 Thread Martin Maechler
[Mainly for R-foundation members; but kept in public for general brainstorming...] > "Simon" == Simon Urbanek <[EMAIL PROTECTED]> > on Thu, 3 Nov 2005 12:16:25 -0500 writes: <> Simon> As Brian was saying, the error was fixed in R Simon> immediately afte