[Rd] BIC doesn't work for glm(family=binomial()) (PR#8208)

2005-10-15 Thread jusung
Full_Name: Ju-Sung Lee Version: 2.2.0 OS: Windows XP Submission from: (NULL) (66.93.61.221) BIC() requires the attribute $nobs from the logLik object but the logLik of a glm(formula,family=binomial()) object does not include $nobs. Adding attr(obj,'nobs') = value, seems to allow BIC() to work.

Re: [Rd] [R-gui] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-15 Thread James Wettenhall
Hi Philippe and everyone else, As you know, I have certainly spent some time thinking about R-GUIs, and developing some R-Tcl/Tk GUIs - limmaGUI and affylmGUI (available from Bioconductor). I have also spent some time wishing we could use a GUI toolkit with a more modern look and feel. Hence I h

Re: [Rd] [R-gui] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-15 Thread Duncan Temple Lang
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 I think it is a little premature to entirely discount Gtk2, especially if it is based on Philippe's remark below. Philippe, did you try other applications, different themes, different configurations, or just the vanilla GIMP? and when? While I don't

Re: [Rd] drop() and "["(), and apply()

2005-10-15 Thread Peter Dalgaard
Dan Davison <[EMAIL PROTECTED]> writes: > I have two queries about the behaviour of drop() and apply() regarding the > dimnames and names(dimnames) of the answer. I would appreciate any > comments on this behaviour. I will submit any of this as a bug report if I > am encouraged to do so. > > T

[Rd] drop() and "["(), and apply()

2005-10-15 Thread Dan Davison
I have two queries about the behaviour of drop() and apply() regarding the dimnames and names(dimnames) of the answer. I would appreciate any comments on this behaviour. I will submit any of this as a bug report if I am encouraged to do so. The first query, concerning drop(), seems to me to be

Re: [Rd] checking S3 generic/method consistency

2005-10-15 Thread Kurt Hornik
> Paul Gilbert writes: > In R-2.2.0, how does "checking S3 generic/method consistency" > determine which generic to check against when there are two? I have a > generic "simulate" in dse1 and there is a new generic "simulate" in > stats, and I don't seem to be able to get my simulate

[Rd] typo in R FAQ: sources.list entry for debian 'stable' backports

2005-10-15 Thread Dan Davison
The R FAQ at http://cran.r-project.org/doc/FAQ/R-FAQ.html#Are-there-Unix-binaries-for-R_003f advises the use of the following /etc/apt/sources.list entry deb http://cran.R-project.org/bin/linux/debian stable . I think that this is missing a forward slash after the word 'stable'. >From man source

Re: [Rd] [R-gui] R GUI considerations

2005-10-15 Thread Duncan Murdoch
Gabor Grothendieck wrote: > I notice that there is some discussion on this at > http://developer.r-project.org/ under the links involving the > word threading. Thus using the facilities of another language > seems to be one approach and building such facilities into > R itself another. > > On 10/

Re: [Rd] Hiccup in installing R 2.2.0

2005-10-15 Thread Peter Dalgaard
Rolf Turner <[EMAIL PROTECTED]> writes: > Yesterday I downloaded R-2.2.0.tar.gz, gunzipped and untarred, and > did the usual ./configure and make. Everything seemed to go smoothly > until it got to the bit about installing recommended packages. It > got past ``spatial'' but turned up a fatal err

Re: [Rd] [R-gui] R GUI considerations

2005-10-15 Thread Gabor Grothendieck
I notice that there is some discussion on this at http://developer.r-project.org/ under the links involving the word threading. Thus using the facilities of another language seems to be one approach and building such facilities into R itself another. On 10/15/05, Philippe Grosjean <[EMAIL PROTECT

[Rd] Hiccup in installing R 2.2.0

2005-10-15 Thread Rolf Turner
Yesterday I downloaded R-2.2.0.tar.gz, gunzipped and untarred, and did the usual ./configure and make. Everything seemed to go smoothly until it got to the bit about installing recommended packages. It got past ``spatial'' but turned up a fatal error in respect of the ``boot'' package. Here is s

Re: [Rd] [R-gui] R GUI considerations

2005-10-15 Thread Philippe Grosjean
Gabor Grothendieck wrote: > The preferred solutions in the post all seem to involve another language: > > - tcl to use tk > - Python to use wxWidgets > > and other solutions mentioned also seem to involve other languages: > > - Visual Basic > - Java (Swing?) > > Is there some key missing featur

Re: [Rd] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-15 Thread Gabor Grothendieck
The preferred solutions in the post all seem to involve another language: - tcl to use tk - Python to use wxWidgets and other solutions mentioned also seem to involve other languages: - Visual Basic - Java (Swing?) Is there some key missing feature in R with regards to GUIs that requires interp

[Rd] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-15 Thread Philippe Grosjean
Hello, Following a discussion initiated on r-devel, that mentions SciViews-R and other GUIs issues for R, I would like to make comments (and would be happy if these comments would initiate interesting initiatives). A big, big problem with SciViews-R is that a part of it is written in Visual Ba

Re: [Rd] Compilation of R-2.2.0 under SUSE 10

2005-10-15 Thread Detlef Steuer
On 14 Oct 2005 16:19:44 +0200 Peter Dalgaard <[EMAIL PROTECTED]> wrote: > Detlef Steuer <[EMAIL PROTECTED]> writes: > > > Hi, > > > > most probably you are missing xorg-devel packages. > > But there is another problem: > > At least the downloadable version of 10.0 does not contain _any_ > > fort

Re: [Rd] extending lattice to S4 classes

2005-10-15 Thread Prof Brian Ripley
I think you are confusing us: xyplot is an S3 generic with no 'data' argument. It is xyplot.formula that you want to add dispatch on its 'data' argument. I don't really see why you want to mix S3 and S4 systems, but you could make xyplot.formula an S3 or S4 generic and dispatch on 'data', ju