On Mon, Mar 16, 2009 at 5:29 PM, Robert Kern wrote:
> 2009/3/16 Peter Saffrey :
>
>> At the moment, I'm using a fairly naive approach that finds roughly in the
>> genome (which gene) each point might be and then checking it against the
>> bins in that gene. If I split the problem into chromosomes,
2009/3/16 Peter Saffrey :
> At the moment, I'm using a fairly naive approach that finds roughly in the
> genome (which gene) each point might be and then checking it against the
> bins in that gene. If I split the problem into chromosomes, I feel sure
> there must be some super-fast matrix approac
I'm trying to file a set of data points, defined by genome coordinates, into
bins, also based on genome coordinates. Each data point is (chromosome, start,
end, point) and each bin is (chromosome, start, end). I have about 140 million
points to file into around 100,000 bins. Both are (roughly)
