Re: [Numpy-discussion] Numpy Installation Problem Asking

2014-03-20 Thread Chia Jing Yi
Hi, Thanks a lot for your email. I will upload the full traceback soon. Sorry for posting the same thread at scipy-user too. I don't aware about that numpy and scipy user group is linked. I apologize for my mistakes. I will be more careful in future. best regards Edge On Fri, Mar 21, 2014 a

Re: [Numpy-discussion] Numpy Installation Problem Asking

2014-03-20 Thread Ralf Gommers
On Thu, Mar 20, 2014 at 4:04 PM, Chia Jing Yi wrote: > Hi, > > I plan to plot a sashimi plot to view the alternative splicing event of my > interested "gene" by using MISO. > > After follow the following link, http://genes.mit.edu/burgelab/miso/docs/and > read through the forum. > Unfortunately,

[Numpy-discussion] Numpy Installation Problem Asking

2014-03-20 Thread Chia Jing Yi
Hi, I plan to plot a sashimi plot to view the alternative splicing event of my interested "gene" by using MISO. After follow the following link, http://genes.mit.edu/burgelab/miso/docs/and read through the forum. Unfortunately, I still face some problems to run the complete set of MISO successful

Re: [Numpy-discussion] Numpy Installation Problem on Redhat Linux

2012-07-06 Thread Hung-Hsuan Chen
Thank you. This is very helpful! On Fri, Jul 6, 2012 at 6:23 AM, Aron Ahmadia wrote: > I usually find these problems by searching for "error" in the output, in > your case the complete problem is at the bottom of the log. The relocation > errors you're seeing are happening because the build pro

Re: [Numpy-discussion] Numpy Installation Problem on Redhat Linux

2012-07-06 Thread Aron Ahmadia
I usually find these problems by searching for "error" in the output, in your case the complete problem is at the bottom of the log. The relocation errors you're seeing are happening because the build process is trying to link in Atlas libraries (located here: /home/hxc249/lib/atlas/lib/) that wer

Re: [Numpy-discussion] Numpy Installation Problem on Redhat Linux

2012-07-06 Thread Hung-Hsuan Chen
Link is a great suggestion! I was hesitating about whether or not to paste such a long output. The site.cfg file is shown in the following link. https://gist.github.com/3059209 The output message for $ python setup.py build --fcompiler=gnu95 can be found at the URL. https://gist.github.com/30593

Re: [Numpy-discussion] Numpy Installation Problem on Redhat Linux

2012-07-06 Thread Paul Anton Letnes
> > However, I got the following error message: > error: Command "/usr/bin/g77 -g -Wall -g -Wall -shared > build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.o > build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/fortranobject.o > -L/home/username/lib/ -L/usr/lib

Re: [Numpy-discussion] Numpy Installation Problem on Redhat Linux

2012-07-06 Thread Hung-Hsuan Chen
Thank you for pointing this out. Actually I tried both --fcompiler=gnu95 and --fcompiler=gnu flags, but I got the same error message. As for the redhat version, I'm using Red Hat Enterprise Linux Server release 6.3 (Santiago). On Fri, Jul 6, 2012 at 12:42 AM, Paul Anton Letnes wrote: > Hi, > >

Re: [Numpy-discussion] Numpy Installation Problem on Redhat Linux

2012-07-05 Thread Paul Anton Letnes
Hi, are you sure that you want g77 and not gfortran? If you want gfortran, you should pass the > --fcompiler=gnu95 flag to setup.py. Which redhat version are you building on? (I don't know red hat well enough to comment, but perhaps someone else do...) Paul On 6. juli 2012, at 03:00, Hung-Hsu

[Numpy-discussion] Numpy Installation Problem on Redhat Linux

2012-07-05 Thread Hung-Hsuan Chen
Dear all, I've built blas, lapack, and atlas libraries, as shown below. $ ls ~/lib/atlas/lib/ libatlas.a libcblas.a libf77blas.a liblapack.a libptcblas.a libptf77blas.a The library location are specified by site.cfg file, as shown below. [DEFAULT] library_dirs = /home/username/lib/atlas/li

Re: [Numpy-discussion] numpy installation problem?

2012-03-18 Thread Benjamin Root
On Sunday, March 18, 2012, wrote: > Dear list, > I am having problems installing matplotlib (from source) and fipy. > I had installed numpy from source and it is running well: > :~$ python -c "import numpy; print numpy.__version__" > 1.6.1 > After being trying to solve this problem on matplotlib

[Numpy-discussion] numpy installation problem?

2012-03-18 Thread avalle
Dear list, I am having problems installing matplotlib (from source) and fipy. I had installed numpy from source and it is running well: :~$ python -c "import numpy; print numpy.__version__" 1.6.1 After being trying to solve this problem on matplotlib list, I was recommended to ask numpy list. I cop

Re: [Numpy-discussion] numpy installation

2011-01-03 Thread Paul Ivanov
Waqar Rashid, on 2011-01-02 00:38, wrote: > Hi, > > trying to install numpy on MacOS with python 3.1 > > Having installation issues. Has anyone managed to install this on the Mac? > > regards > Waqar - you sent this to the IPython-User list, but I think you probably meant to send it to the n

Re: [Numpy-discussion] numpy installation in ubuntu

2010-10-19 Thread Alex Ter-Sarkissov
thanks! it actually worked! maybe u could recommend some good sources/readin on how to install different modules in python run under linux thanks again, alex 2010/10/19 Pauli Virtanen > Tue, 19 Oct 2010 21:26:38 +1300, Alex Ter-Sarkissov wrote: > > thanks, this didn't seem to work. I get a who

Re: [Numpy-discussion] numpy installation in ubuntu

2010-10-19 Thread Pauli Virtanen
Tue, 19 Oct 2010 21:26:38 +1300, Alex Ter-Sarkissov wrote: > thanks, this didn't seem to work. I get a whole range of errors, most > importantly > > SystemError: Cannot compiler 'Python.h'. Perhaps you need to install > python-dev|python-devel. I think you should do "sudo apt-get install python-d

Re: [Numpy-discussion] numpy installation in ubuntu

2010-10-19 Thread Alex Ter-Sarkissov
thanks, this didn't seem to work. I get a whole range of errors, most importantly SystemError: Cannot compiler 'Python.h'. Perhaps you need to install python-dev|python-devel. Apparently, according to numpy installation guide (here

Re: [Numpy-discussion] numpy installation in ubuntu

2010-10-18 Thread David
On 10/18/2010 10:45 PM, Pauli Virtanen wrote: > Mon, 18 Oct 2010 09:07:42 -0400, Ian Goodfellow wrote: > >> To do a standard installation, run >> sudo python setup.py install >> from inside the numpy directory > > Preferably, > > sudo python setup.py install --prefix=/usr/local > > and then y

Re: [Numpy-discussion] numpy installation in ubuntu

2010-10-18 Thread Pauli Virtanen
Mon, 18 Oct 2010 09:07:42 -0400, Ian Goodfellow wrote: > To do a standard installation, run > sudo python setup.py install > from inside the numpy directory Preferably, sudo python setup.py install --prefix=/usr/local and then you don't mess up your package manager. Pauli

Re: [Numpy-discussion] numpy installation in ubuntu

2010-10-18 Thread Ian Goodfellow
To do a standard installation, run sudo python setup.py install from inside the numpy directory Then your import should work elsewhere. By the way, "import *" can cause difficulties when you're working with several different files. For example, if you have a function called 'save' somewhere that

Re: [Numpy-discussion] numpy installation in ubuntu

2010-10-18 Thread Peter
On Mon, Oct 18, 2010 at 11:55 AM, Alex Ter-Sarkissov wrote: > hi everyone, i'm very new to ubuntu, now trying to install numpy and > wxpython. Did you consider installing the Ubuntu provided packages, e.g. via apt-get or the Synaptic Package manager? That is *much* easier - but you won't get the

[Numpy-discussion] numpy installation in ubuntu

2010-10-18 Thread Alex Ter-Sarkissov
hi everyone, i'm very new to ubuntu, now trying to install numpy and wxpython. Having unpacked numpy and running the standard commnad in idle from numpy import * i get the message ImportError: Error importing numpy: you should not try to import numpy from its source directory; please ex

[Numpy-discussion] numpy installation

2010-10-04 Thread P Sanjey
I couldn't intially install numpy on python2.4...installing then importing resulted in the following (please read below before answering thanks) >>> import numpy Traceback (most recent call last): File "", line 1, in ? File "/cluster/lib/python2.4/site-packages/numpy/__init__.py", line 147

Re: [Numpy-discussion] numpy installation problems

2010-08-23 Thread Friedrich Romstedt
2010/8/23 martin djokovic : > /usr/local/lib/python2.4/site-packages/numpy/fft/fftpack_lite.so: undefined > symbol: vmldCos2 To me this looks familiar ... I ran into this problem usually when having Python compiled with another compiler than the library. In your case, it's a bit strange, because

Re: [Numpy-discussion] numpy installation problems

2010-08-22 Thread David
On 08/23/2010 07:59 AM, martin djokovic wrote: > Do you think I should reinstall gcc? You most likely already have gcc, there is no need to reinstall it. The missing symbol refers to the math library from icc, so if you can find the missing libraries, you should be set: 1: get the name of the m

[Numpy-discussion] numpy installation problems

2010-08-22 Thread martin djokovic
Do you think I should reinstall gcc? I do have the root password if nessasary Thanks for the replies ___ NumPy-Discussion mailing list NumPy-Discussion@scipy.org http://mail.scipy.org/mailman/listinfo/numpy-discussion

[Numpy-discussion] numpy installation problems

2010-08-22 Thread martin djokovic
Actually I don't need scipy just need to get numpy working again. Scipy I downloaded a tar file from a mirror site. Sorry about the confusion-if I can get numpy working I would be happy. I have tried even installing an older version of numpy suitable for ferdora 6 Thanks a lot

Re: [Numpy-discussion] numpy installation problems

2010-08-22 Thread Benjamin Root
On Sun, Aug 22, 2010 at 5:29 PM, martin djokovic wrote: > Hello everyone, > > I have an old machine with Fedora 6 installed -numpy was installed but when > I tried to install scipy it did not work so I gave up but that messed up my > already installed numpy and now I get the following error messag

Re: [Numpy-discussion] numpy installation problems

2010-08-22 Thread David Cournapeau
On Mon, Aug 23, 2010 at 7:29 AM, martin djokovic wrote: > Hello everyone, > > I have an old machine with Fedora 6 installed -numpy was installed but when > I tried to install scipy it did not work so I gave up but that messed up my > already installed numpy and now I get the following error messag

[Numpy-discussion] numpy installation problems

2010-08-22 Thread martin djokovic
Hello everyone, I have an old machine with Fedora 6 installed -numpy was installed but when I tried to install scipy it did not work so I gave up but that messed up my already installed numpy and now I get the following error message >>> import numpy Tr

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
>> Yes, you should be worried. To run the numpy tests you need to install > nose. That's what your output said: > > ImportError: Need nose >= 0.10.0 for tests - see > http://somethingaboutorange.com/mrl/projects/nose > > For h5py, you might want to try the h5py list. Did you remove the > build di

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Keith Goodman
On Sat, Jul 24, 2010 at 3:39 PM, Jonathan Tu wrote: > > On Jul 24, 2010, at 6:21 PM, David Cournapeau wrote: > >> On Sun, Jul 25, 2010 at 7:12 AM, Jonathan Tu wrote: >> >>> >>> What does that part do?  It turns out that by fixing my library path, numpy >>> now imports.  I assume that my installa

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
On Jul 24, 2010, at 6:21 PM, David Cournapeau wrote: > On Sun, Jul 25, 2010 at 7:12 AM, Jonathan Tu wrote: > >> >> What does that part do? It turns out that by fixing my library path, numpy >> now imports. I assume that my installation of h5py doesn't need to be >> redone just because I re

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 7:12 AM, Jonathan Tu wrote: > > What does that part do?  It turns out that by fixing my library path, numpy > now imports.  I assume that my installation of h5py doesn't need to be redone > just because I reinstalled Numpy? Actually, you may have to if you installed h5p

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Keith Goodman
On Sat, Jul 24, 2010 at 3:12 PM, Jonathan Tu wrote: > > On Jul 24, 2010, at 6:09 PM, David Cournapeau wrote: > >> On Sun, Jul 25, 2010 at 7:00 AM, Jonathan Tu wrote: If you install shared libraries into a directory which is not looked in by default by ld, you should add it to the LD_LIB

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
On Jul 24, 2010, at 6:09 PM, David Cournapeau wrote: > On Sun, Jul 25, 2010 at 7:00 AM, Jonathan Tu wrote: >>> If you install shared libraries into a directory which is not looked >>> in by default by ld, you should add it to the LD_LIBRARY_PATH, e.g.: >>> >>> LD_LIBRARY_PATH=$HOME/local/lib:$L

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 7:00 AM, Jonathan Tu wrote: >> If you install shared libraries into a directory which is not looked >> in by default by ld, you should add it to the LD_LIBRARY_PATH, e.g.: >> >> LD_LIBRARY_PATH=$HOME/local/lib:$LD_LIBRARY_PATH python -c "import numpy" >> >> David > > Ok, th

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
> If you install shared libraries into a directory which is not looked > in by default by ld, you should add it to the LD_LIBRARY_PATH, e.g.: > > LD_LIBRARY_PATH=$HOME/local/lib:$LD_LIBRARY_PATH python -c "import numpy" > > David Ok, that makes sense to me. I tried to see what the current value

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 6:50 AM, Jonathan Tu wrote: > > Also, I recently tried this all again, only doing make shared, and only > using the list of libraries without "pt."  In both cases, when I ran Python > interactively and tried to load the numpy module, I got the following: import numpy

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
On Jul 24, 2010, at 5:46 PM, Jonathan Tu wrote: >> Here is what I would do for RHEL4: >> - use python 2.6, not 2.7, because the released numpy does not support 2.7 >> yet. >> - build atlas 3.8.3 and lapack 3.1.1 by yourself: this is your core >> issue here. Both lapack and atlas should be built

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
> Here is what I would do for RHEL4: > - use python 2.6, not 2.7, because the released numpy does not support 2.7 > yet. > - build atlas 3.8.3 and lapack 3.1.1 by yourself: this is your core > issue here. Both lapack and atlas should be built with the -fPIC flag > on x86_64 arch (modify the make.i

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 5:18 AM, Jonathan Tu wrote: >> It shows you don't use either atlas or even simple lapack. If your >> install used atlas, the atlas libraries would show up on those .so >> with ldd, >> >> David >> > > Hmm.  Ok.  What I did for Numpy installation was check out the source code

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
> It shows you don't use either atlas or even simple lapack. If your > install used atlas, the atlas libraries would show up on those .so > with ldd, > > David > Hmm. Ok. What I did for Numpy installation was check out the source code using svn. Then I did python setup.py build where

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 5:13 AM, David Cournapeau wrote: > On Sun, Jul 25, 2010 at 5:11 AM, Jonathan Tu wrote: >> >> On Jul 24, 2010, at 4:04 PM, Keith Goodman wrote: >> >>> On Sat, Jul 24, 2010 at 12:58 PM, David Cournapeau >>> wrote: On Sun, Jul 25, 2010 at 4:50 AM, Jonathan Tu wrote: >

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 5:11 AM, Jonathan Tu wrote: > > On Jul 24, 2010, at 4:04 PM, Keith Goodman wrote: > >> On Sat, Jul 24, 2010 at 12:58 PM, David Cournapeau >> wrote: >>> On Sun, Jul 25, 2010 at 4:50 AM, Jonathan Tu wrote: >>> I am unable to find the files lapack_lite.so or _dotblas.s

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
On Jul 24, 2010, at 4:04 PM, Keith Goodman wrote: > On Sat, Jul 24, 2010 at 12:58 PM, David Cournapeau wrote: >> On Sun, Jul 25, 2010 at 4:50 AM, Jonathan Tu wrote: >> >>> I am unable to find the files lapack_lite.so or _dotblas.so. I used the >>> locate command to look for them. >> >> If y

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Keith Goodman
On Sat, Jul 24, 2010 at 12:58 PM, David Cournapeau wrote: > On Sun, Jul 25, 2010 at 4:50 AM, Jonathan Tu wrote: > >> I am unable to find the files lapack_lite.so or _dotblas.so.  I used the >> locate command to look for them. > > If you just installed numpy, locate won't find them as locate uses

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 4:50 AM, Jonathan Tu wrote: > I am unable to find the files lapack_lite.so or _dotblas.so.  I used the > locate command to look for them. If you just installed numpy, locate won't find them as locate uses a database which is usually updated once in a while. Depending on

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
On Sat 24/07/10 3:39 PM , David Cournapeau wrote: > On Sun, Jul 25, 2010 at 4:23 AM, Jonathan Tu wrote: > > > > On Jul 24, 2010, at 3:08 PM, Benjamin Root wrote: > > > > On Fri, Jul 23, 2010 at 10:10 AM, Jonathan Tu wrote: > >> > >> Hi, > >> I am trying to install Numpy on a Linux cluster

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 4:23 AM, Jonathan Tu wrote: > > On Jul 24, 2010, at 3:08 PM, Benjamin Root wrote: > > On Fri, Jul 23, 2010 at 10:10 AM, Jonathan Tu wrote: >> >> Hi, >> I am trying to install Numpy on a Linux cluster running RHEL4.  I >> installed a local copy of Python 2.7 because RHEL4 u

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
On Jul 24, 2010, at 3:08 PM, Benjamin Root wrote: > On Fri, Jul 23, 2010 at 10:10 AM, Jonathan Tu wrote: > Hi, > > I am trying to install Numpy on a Linux cluster running RHEL4. I installed a > local copy of Python 2.7 because RHEL4 uses Python 2.3.4 for various internal > functionalities.

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Benjamin Root
On Fri, Jul 23, 2010 at 10:10 AM, Jonathan Tu wrote: > Hi, > > I am trying to install Numpy on a Linux cluster running RHEL4. I installed > a local copy of Python 2.7 because RHEL4 uses Python 2.3.4 for various > internal functionalities. I downloaded the Numpy source code using > > svn co http

[Numpy-discussion] Numpy installation problem

2010-07-23 Thread Jonathan Tu
Hi,I am trying to install Numpy on a Linux cluster running RHEL4.  I installed a local copy of Python 2.7 because RHEL4 uses Python 2.3.4 for various internal functionalities.  I downloaded the Numpy source code usingsvn co http://svn.scipy.org/svn/numpy/trunk numpyand then I tried to build usingpy

Re: [Numpy-discussion] numpy installation question (IronPython)

2010-07-13 Thread Joshua Holbrook
On Tue, Jul 13, 2010 at 4:31 AM, Wes McKinney wrote: > On Tue, Jul 13, 2010 at 8:26 AM, Sebastian Haase wrote: >> On Tue, Jul 13, 2010 at 2:20 PM, William Johnston >> wrote: >>> Hello, >>> >>> I simply installed numpy in my Python26 installation, and then copied the >>> numpy directory to my si

Re: [Numpy-discussion] numpy installation question (IronPython)

2010-07-13 Thread Wes McKinney
On Tue, Jul 13, 2010 at 8:26 AM, Sebastian Haase wrote: > On Tue, Jul 13, 2010 at 2:20 PM, William Johnston > wrote: >> Hello, >> >> I simply installed numpy in my Python26 installation, and then copied the >> numpy directory to my site-packages folder of my IronPython installation. >> >> Did I

Re: [Numpy-discussion] numpy installation question (IronPython)

2010-07-13 Thread Sebastian Haase
On Tue, Jul 13, 2010 at 2:20 PM, William Johnston wrote: > Hello, > > I simply installed numpy in my Python26 installation, and then copied the > numpy directory to my site-packages folder of my IronPython installation. > > Did I miss any installation steps in doing so?  The multiarray module coul

[Numpy-discussion] numpy installation question (IronPython)

2010-07-13 Thread William Johnston
Hello, I simply installed numpy in my Python26 installation, and then copied the numpy directory to my site-packages folder of my IronPython installation. Did I miss any installation steps in doing so? The multiarray module could not be found using IronPython. Thanks. ___

Re: [Numpy-discussion] numpy installation with nonroot python installation

2009-03-23 Thread charlie
Alright, I solved this by using numscons. On Mon, Mar 23, 2009 at 12:48 AM, charlie wrote: > Dear numpyers, > > I am trying to install numpy 1.3 with my own version of python 2.5. I got > stuck with following error: > *building 'numpy.core.multiarray' extension > compiling C sources > C compiler

Re: [Numpy-discussion] numpy installation as non root using site.cfg

2008-09-29 Thread pgmoses
Thank you Robert It is now possible for me to install numpy. I get an error with the defaults libraries, which I have reported in a pending mail to the mailen list. Then I tried to use the intel mkl libraries in this way: [mkl] library_dirs = /opt/intel/mkl70/lib/32 mkl_libs = mkl, guide lapack_l

Re: [Numpy-discussion] numpy installation as non root using site.cfg

2008-09-26 Thread Robert Kern
On Fri, Sep 26, 2008 at 18:07, Poul Georg Moses <[EMAIL PROTECTED]> wrote: > > Dear mailing list > > I am trying to install numpy-1.1.1 on a cluster where I do not have root > permission. I have succesfully installed \ > python2.5.2. I am using the cite.cfg file to include the blas and atlas > libr

[Numpy-discussion] numpy installation as non root using site.cfg

2008-09-26 Thread Poul Georg Moses
Dear mailing list I am trying to install numpy-1.1.1 on a cluster where I do not have root permission. I have succesfully installed \ python2.5.2. I am using the cite.cfg file to include the blas and atlas libraries. I have done that by setting the\ defaults to: library_dirs = /usr/lib include_d

Re: [Numpy-discussion] numpy installation issues

2008-07-08 Thread David Cournapeau
On Mon, Jul 7, 2008 at 3:11 PM, Chris Bartels <[EMAIL PROTECTED]> wrote: > Hi David (and others) > > This issue is known: > http://www.scipy.org/scipy/numpy/ticket/811 > > I think this is an issue for the numpy developers. (I don't know how to fix > this easily, i can try to install an older versio

Re: [Numpy-discussion] numpy installation issues

2008-07-07 Thread Chris Bartels
After installing the old binutils. (I hope this will not be necessary for future numpy versions, that these can run on an unmodified cygwin install) I managed to build and install. Running numpy in python now gives some errors in the unit test: Type "help", "copyright", "credits" or "license" for

Re: [Numpy-discussion] numpy installation issues

2008-07-07 Thread Chris Bartels
Hi David (and others) This issue is known: http://www.scipy.org/scipy/numpy/ticket/811 I think this is an issue for the numpy developers. (I don't know how to fix this easily, i can try to install an older version of binutils (if cygwin has these), but this will probably break a lot of other stuf

Re: [Numpy-discussion] numpy installation issues

2008-07-07 Thread Chris Bartels
Hi David, I just discovered this: http://mail.python.org/pipermail/python-bugs-list/2006-April/032817.html I'm currently trying. On Mon, Jul 7, 2008 at 2:22 PM, David Cournapeau < [EMAIL PROTECTED]> wrote: > Chris Bartels wrote: > > Hi David, > > > > Thanks again. > > > > Unfortunately these

Re: [Numpy-discussion] numpy installation issues

2008-07-07 Thread David Cournapeau
Chris Bartels wrote: > Hi David, > > Thanks again. > > Unfortunately these variables are not set in the environment. (I > checked with 'env'.) > I also reinstalled the cygwin python package (again) and ran 'find . > -name libpython* -print', this gives: > > /usr/bin/libpython2.5.dll > /usr/lib/pyt

Re: [Numpy-discussion] numpy installation issues

2008-07-07 Thread Chris Bartels
Hi David, Thanks again. Unfortunately these variables are not set in the environment. (I checked with 'env'.) I also reinstalled the cygwin python package (again) and ran 'find . -name libpython* -print', this gives: /usr/bin/libpython2.5.dll /usr/lib/python2.5/config/libpython2.5.dll.a The /u

Re: [Numpy-discussion] numpy installation issues

2008-07-07 Thread David Cournapeau
Chris Bartels wrote: > > Sorry, my message was ambiguous: I indeed did this, I installed python > from the cygwin installer Ok. Python sources are not needed to build python extensions. Only the headers and the python runtime are needed. Basically, the problem is that for some reason, the library

Re: [Numpy-discussion] numpy installation issues

2008-07-07 Thread Chris Bartels
Hi David, Thank you for the quick reply. It looks like you did not install python correctly. I strongly recommend > you to use the python available for cygwin, after having removed the > python you installed from sources. Installing the python package does > give you /usr/lib/python2.5/config, as

Re: [Numpy-discussion] numpy installation issues

2008-07-07 Thread David Cournapeau
Chris Bartels wrote: > Hi, > > I have been trying to install numpy (as a dependancy of matplotlib) on > cygwin. I would like to use the native cygwin-python numpy install, as > the cygwin development environment I use is portable on usb disk > (http://www.dam.brown.edu/people/sezer/software/cygwin/

Re: [Numpy-discussion] Numpy installation

2008-04-02 Thread Amit Itagi
Great !! This works for me. Thanks for your help !! Rgds, Amit On Tue, Apr 1, 2008 at 5:36 PM, Robert Kern <[EMAIL PROTECTED]> wrote: > On Tue, Apr 1, 2008 at 4:21 PM, Amit Itagi <[EMAIL PROTECTED]> wrote: > > This directory is just the Python source distribution (post configure > and > > make)

Re: [Numpy-discussion] Numpy installation

2008-04-01 Thread Robert Kern
On Tue, Apr 1, 2008 at 4:21 PM, Amit Itagi <[EMAIL PROTECTED]> wrote: > This directory is just the Python source distribution (post configure and > make). I don't have root permissions to our cluster and the default python > distribution is an older one. Hence, I have my custom Python distribution

Re: [Numpy-discussion] Numpy installation

2008-04-01 Thread Amit Itagi
This directory is just the Python source distribution (post configure and make). I don't have root permissions to our cluster and the default python distribution is an older one. Hence, I have my custom Python distribution in this /Python-2.5.2/ directory. The binary is /Python-2.5.2/python . On T

Re: [Numpy-discussion] Numpy installation

2008-04-01 Thread Robert Kern
On Tue, Apr 1, 2008 at 4:03 PM, Amit Itagi <[EMAIL PROTECTED]> wrote: > Robert, > > I followed the recommended steps. Now I have "numpy" and > "numpy-1.0.4-py2.5.egg-info" in > Python-2.5.2/lib/python2.5/site-packages. However, I am not able to import > numpy at the python prompt. Do I have to set

Re: [Numpy-discussion] Numpy installation

2008-04-01 Thread Amit Itagi
Robert, I followed the recommended steps. Now I have "numpy" and " numpy-1.0.4-py2.5.egg-info" in Python-2.5.2/lib/python2.5/site-packages. However, I am not able to import numpy at the python prompt. Do I have to set pythonpath or something ? Thanks Rgds, Amit On Tue, Apr 1, 2008 at 2:44 PM, R

Re: [Numpy-discussion] Numpy installation

2008-04-01 Thread Robert Kern
On Tue, Apr 1, 2008 at 1:31 PM, Amit Itagi <[EMAIL PROTECTED]> wrote: > > On Tue, Apr 1, 2008 at 1:21 PM, Robert Kern <[EMAIL PROTECTED]> wrote: > > > > On Tue, Apr 1, 2008 at 10:16 AM, Amit Itagi <[EMAIL PROTECTED]> wrote: > > > I am installing this on a CENTOS linux platform (64 bit AMD opteron).

Re: [Numpy-discussion] Numpy installation

2008-04-01 Thread Amit Itagi
On Tue, Apr 1, 2008 at 12:43 PM, David Cournapeau <[EMAIL PROTECTED]> wrote: > On Tue, Apr 1, 2008 at 8:16 AM, Amit Itagi <[EMAIL PROTECTED]> wrote: > > > > I figured how to specify a particular installation of the libraries. I > want > > to do the opposite. How do I specify the following in site.

Re: [Numpy-discussion] Numpy installation

2008-04-01 Thread Amit Itagi
On Tue, Apr 1, 2008 at 12:43 PM, David Cournapeau <[EMAIL PROTECTED]> wrote: > On Tue, Apr 1, 2008 at 8:16 AM, Amit Itagi <[EMAIL PROTECTED]> wrote: > > > > I figured how to specify a particular installation of the libraries. I > want > > to do the opposite. How do I specify the following in site.

Re: [Numpy-discussion] Numpy installation

2008-04-01 Thread Amit Itagi
On Tue, Apr 1, 2008 at 1:21 PM, Robert Kern <[EMAIL PROTECTED]> wrote: > On Tue, Apr 1, 2008 at 10:16 AM, Amit Itagi <[EMAIL PROTECTED]> wrote: > > I am installing this on a CENTOS linux platform (64 bit AMD opteron). > The > > path to my python directory is /home/amit/packages/Python-2.5.2 . If I

Re: [Numpy-discussion] Numpy installation

2008-04-01 Thread Robert Kern
On Tue, Apr 1, 2008 at 10:16 AM, Amit Itagi <[EMAIL PROTECTED]> wrote: > I am installing this on a CENTOS linux platform (64 bit AMD opteron). The > path to my python directory is /home/amit/packages/Python-2.5.2 . If I > temporarily make the atlas library unavailable (by renaming the directory to

Re: [Numpy-discussion] Numpy installation

2008-04-01 Thread Robert Kern
On Tue, Apr 1, 2008 at 10:16 AM, Amit Itagi <[EMAIL PROTECTED]> wrote: > > On Mon, Mar 31, 2008 at 11:06 PM, Robert Kern <[EMAIL PROTECTED]> wrote: > > > > On Mon, Mar 31, 2008 at 4:17 PM, Amit Itagi <[EMAIL PROTECTED]> wrote: > > > Hi, > > > > > > I am having problems with numpy installation. > >

Re: [Numpy-discussion] Numpy installation

2008-04-01 Thread David Cournapeau
On Tue, Apr 1, 2008 at 8:16 AM, Amit Itagi <[EMAIL PROTECTED]> wrote: > > I figured how to specify a particular installation of the libraries. I want > to do the opposite. How do I specify the following in site.cfg - "Don't > search for the library. Assume that it is absent and use the default slow

Re: [Numpy-discussion] Numpy installation

2008-04-01 Thread Amit Itagi
On Mon, Mar 31, 2008 at 11:06 PM, Robert Kern <[EMAIL PROTECTED]> wrote: > On Mon, Mar 31, 2008 at 4:17 PM, Amit Itagi <[EMAIL PROTECTED]> wrote: > > Hi, > > > > I am having problems with numpy installation. > > > > 1) These is an atlas 3.8.0 library installed somewhere in the search > path. > > H

Re: [Numpy-discussion] numpy installation

2008-03-31 Thread Priyadarshini Bangale
Dear sir while installing numpy i'm getting following errors: o/p is attached here below. in that mkl libraries are not found in that path but the thing is that all mkl libraries are available in the same path!! so please advice me that what should i do for all these errors!!! OUTPUT: Running fro

Re: [Numpy-discussion] Numpy installation

2008-03-31 Thread Robert Kern
On Mon, Mar 31, 2008 at 4:17 PM, Amit Itagi <[EMAIL PROTECTED]> wrote: > Hi, > > I am having problems with numpy installation. > > 1) These is an atlas 3.8.0 library installed somewhere in the search path. > However, the installation gives errors with that installation. Is there a > way to tell the

[Numpy-discussion] Numpy installation

2008-03-31 Thread Amit Itagi
Hi, I am having problems with numpy installation. 1) These is an atlas 3.8.0 library installed somewhere in the search path. However, the installation gives errors with that installation. Is there a way to tell the installer to install the default (possibly slower) blas, instead of using the one

Re: [Numpy-discussion] numpy installation problem

2007-08-08 Thread lorenzo bolla
sorry for the silly question: have you done "python setup.py install" from the numpy src directory, after untarring? then cd out from the src directory and try to import numpy from python. L. On 7/31/07, kingshuk ghosh <[EMAIL PROTECTED]> wrote: > > Hi, > I downloaded numpy1.0.3-2.tar and unzippe

[Numpy-discussion] numpy installation problem

2007-08-05 Thread kingshuk ghosh
Hi, I downloaded numpy1.0.3-2.tar and unzipped and untared. However somehow new numpy does not work. It invokes the old numpy 0.9.6 when i import numpy from python and type in numpy.version.version . I tried to change path and once I do that and when I do import numpy it says "running from source d