Re: [Numpy-discussion] Linux numpy 1.0.1 install failed - undefined symbol: pthread_join

2007-05-25 Thread Gong, Shawn (Contractor)
Hi Robert The override does the trick. It worked. Thanks and have a nice weekend. Shawn Okay, here is the full scoop: * The multi-threaded ATLAS is always tried first. This doesn't work for you since you compiled your Python without pthreads. * The standard library directories (/usr/lib, /u

Re: [Numpy-discussion] Linux numpy 1.0.1 install failed - undefined symbol: pthread_join

2007-05-25 Thread Robert Kern
Gong, Shawn (Contractor) wrote: > Hi Robert, > I have tried both suggestions and got the same error message when > "import numpy" > > Try #1) changed site.cfg to have only these 3 lines > [atlas] > library_dirs = /usr/local/lib/atlas > libraries = lapack, f77blas, cblas, atlas > > result: did not

Re: [Numpy-discussion] Linux numpy 1.0.1 install failed - undefined symbol: pthread_join

2007-05-25 Thread Robert Kern
Gong, Shawn (Contractor) wrote: > Hi Robert and list, > > My colleague said that it certainly looks like a missing thread library. > It looks like the problem is that lapack_lite was compiled > multi-threaded and can't find the thread library. Okay, it looks like ATLAS's multithreaded libraries a

[Numpy-discussion] Linux numpy 1.0.1 install failed - undefined symbol: pthread_join

2007-05-23 Thread Gong, Shawn (Contractor)
Hi Robert and list, My colleague said that it certainly looks like a missing thread library. It looks like the problem is that lapack_lite was compiled multi-threaded and can't find the thread library. Any solution to that? BTW, I tried 1.0.2 and got the same error. Thanks, Shawn -Original

Re: [Numpy-discussion] Linux numpy 1.0.1 install failed

2007-05-18 Thread Robert Kern
Gong, Shawn (Contractor) wrote: > numpy-1.0.2 (from sourceforge site) doesn't even have the site.cfg file. > Is it unnecessary fro this version or it is a mistake? The site.cfg file is something that people who are installing numpy need to write if they need to supply that information. That inform

Re: [Numpy-discussion] Linux numpy 1.0.1 install failed

2007-05-18 Thread Gong, Shawn (Contractor)
on of Numerical Python Subject: Re: [Numpy-discussion] Linux numpy 1.0.1 install failed Gong, Shawn (Contractor) wrote: > Hi Robert, > 1) your reply: You are missing some of the ATLAS libraries. > Do you mean that I need install more ATLAS libraries? No, sorry, I meant that your site.cfg did n

Re: [Numpy-discussion] Linux numpy 1.0.1 install failed

2007-05-18 Thread Robert Kern
Gong, Shawn (Contractor) wrote: > Hi Robert, > 1) your reply: You are missing some of the ATLAS libraries. > Do you mean that I need install more ATLAS libraries? No, sorry, I meant that your site.cfg did not list all of the ATLAS libraries that need to be listed. > 2) do I need to add more entr

Re: [Numpy-discussion] Linux numpy 1.0.1 install failed

2007-05-18 Thread Gong, Shawn (Contractor)
, May 18, 2007 4:09 PM To: Discussion of Numerical Python Subject: Re: [Numpy-discussion] Linux numpy 1.0.1 install failed Gong, Shawn (Contractor) wrote: > Thank you Robert for the quick reply. I have been fighting this for a > while. > > site.cfg file is attached. It is sitting in my

Re: [Numpy-discussion] Linux numpy 1.0.1 install failed

2007-05-18 Thread Robert Kern
Gong, Shawn (Contractor) wrote: > Thank you Robert for the quick reply. I have been fighting this for a > while. > > site.cfg file is attached. It is sitting in my development dir called > /home/sgong/dev/numpy-1.0.1/ (same as setup.py) You are missing some of the ATLAS libraries. See this sect

Re: [Numpy-discussion] Linux numpy 1.0.1 install failed

2007-05-18 Thread Gong, Shawn (Contractor)
Robert Kern Sent: Friday, May 18, 2007 3:59 PM To: Discussion of Numerical Python Subject: Re: [Numpy-discussion] Linux numpy 1.0.1 install failed Gong, Shawn (Contractor) wrote: > Hi List, > > I am trying to install numpy 1.0.1 on Linux. (Numeric and numarray have been fine) > System

Re: [Numpy-discussion] Linux numpy 1.0.1 install failed

2007-05-18 Thread Robert Kern
Gong, Shawn (Contractor) wrote: > Hi List, > > I am trying to install numpy 1.0.1 on Linux. (Numeric and numarray have been > fine) > System info: Redhat Linux kernel 2.4 with gcc 3.2.3 but no separate FORTRAN > compiler. > It has a Fortran 77 compiler (the one which comes as part of gcc) > > M

[Numpy-discussion] Linux numpy 1.0.1 install failed

2007-05-18 Thread Gong, Shawn (Contractor)
Hi List, I am trying to install numpy 1.0.1 on Linux. (Numeric and numarray have been fine) System info: Redhat Linux kernel 2.4 with gcc 3.2.3 but no separate FORTRAN compiler. It has a Fortran 77 compiler (the one which comes as part of gcc) My questions: 1) install can't find ATLAS (*.a) tha