Re: [Numpy-discussion] Installing numpy with MKL

2010-08-06 Thread Francesc Alted
2010/8/5, David Warde-Farley : > I've been having a similar problem compiling NumPy with MKL on a cluster > with a site-wide license. Dag's site.cfg fails to config if I use 'iomp5' in > it, since (at least with this version, 11.1) libiomp5 is located in > > /scinet/gpc/intel/Compiler/11.1/07

Re: [Numpy-discussion] Installing numpy with MKL

2010-08-05 Thread David Warde-Farley
On 2010-08-05, at 4:53 PM, Søren Gammelmark wrote: > It seems to me, that you are using an libiomp5 for Intel Itanium > (lib/intel64) or such, but an MKL for EM64T-processors (lib/em64t). In > my case I used EM64T in all cases (I'm running AMD Opteron) . I don't > think the two types of librar

Re: [Numpy-discussion] Installing numpy with MKL

2010-08-05 Thread Matthieu Brucher
> I've been having a similar problem compiling NumPy with MKL on a cluster with > a site-wide license. Dag's site.cfg fails to config if I use 'iomp5' in it, > since (at least with this version, 11.1) libiomp5 is located in > >        /scinet/gpc/intel/Compiler/11.1/072/lib/intel64/ > > whereas t

Re: [Numpy-discussion] Installing numpy with MKL

2010-08-05 Thread Søren Gammelmark
It seems to me, that you are using an libiomp5 for Intel Itanium (lib/intel64) or such, but an MKL for EM64T-processors (lib/em64t). In my case I used EM64T in all cases (I'm running AMD Opteron) . I don't think the two types of libraries are compatible, but I might be wrong. /Søren On 05-08-

Re: [Numpy-discussion] Installing numpy with MKL

2010-08-05 Thread David Warde-Farley
On 2010-08-04, at 2:18 AM, Matthieu Brucher wrote: > 2010/8/4 Søren Gammelmark : >> >>> >>> I wouldn't know for sure, but could this be related to changes to the >>> gcc compiler in Fedora 13 (with respect to implicit DSO linking) or >>> would that only be an issue at build-time? >>> >>> http:

Re: [Numpy-discussion] Installing numpy with MKL

2010-08-03 Thread Matthieu Brucher
2010/8/4 Søren Gammelmark : > >> >> I wouldn't know for sure, but could this be related to changes to the >> gcc compiler in Fedora 13 (with respect to implicit DSO linking) or >> would that only be an issue at build-time? >> >> http://fedoraproject.org/w/index.php?title=UnderstandingDSOLinkChange

Re: [Numpy-discussion] Installing numpy with MKL

2010-08-03 Thread Søren Gammelmark
> > I wouldn't know for sure, but could this be related to changes to the > gcc compiler in Fedora 13 (with respect to implicit DSO linking) or > would that only be an issue at build-time? > > http://fedoraproject.org/w/index.php?title=UnderstandingDSOLinkChange I'm not entirely sure I understa

Re: [Numpy-discussion] Installing numpy with MKL

2010-08-03 Thread Benjamin Root
On Tue, Aug 3, 2010 at 3:31 PM, Søren Gammelmark wrote: > I feel a bit silly :-) > The compile now appear to work. Sort of. I discovered I had sneaken in a > "pthreads" in the mkl_libs line, which is obviously not in the > mkl-directory (I had stolen this line from a stand-alone program I wrote >

Re: [Numpy-discussion] Installing numpy with MKL

2010-08-03 Thread Søren Gammelmark
I feel a bit silly :-) The compile now appear to work. Sort of. I discovered I had sneaken in a "pthreads" in the mkl_libs line, which is obviously not in the mkl-directory (I had stolen this line from a stand-alone program I wrote at some point). The error message is a bit confusing though - th

Re: [Numpy-discussion] Installing numpy with MKL

2010-08-03 Thread Dag Sverre Seljebotn
Søren Gammelmark wrote: > Hi everyone > > I realize that this e-mail has been written a lot of times before. I > have, however, not been able to make it work even though I have looked > through a lot of e-mails on the mailinglist. I apologize if the > solution is written neatly somewhere. In my

[Numpy-discussion] Installing numpy with MKL

2010-08-03 Thread Søren Gammelmark
Hi everyone I realize that this e-mail has been written a lot of times before. I have, however, not been able to make it work even though I have looked through a lot of e-mails on the mailinglist. I apologize if the solution is written neatly somewhere. As many others I would like to install