[Numpy-discussion] Sine Distribution on a 2D Array

2010-07-24 Thread Ian Mallett
Hi, So I have a square 2D array, and I want to fill the array with sine values. The values need to be generated by their coordinates within the array. The center of the array should be treated as the angle 90 degrees. Each of the four edges should be 0 degrees. The corners, therefore, ought to

[Numpy-discussion] numpy.append and persisting original datatype

2010-07-24 Thread Benjamin Root
On Sat, Jul 24, 2010 at 4:14 PM, Martin Galpin wrote: > Hello, > > Given the following example: > > import numpy as np > foo = np.array([], dtype=np.float32) > print a.dtype > >> float32 > foo = np.append(foo, 1) > print foo.dtype > >> float64 > > Is this the correct behaviour? I realise that num

Re: [Numpy-discussion] segmentation fault when installing with pip and python2.7

2010-07-24 Thread Geoffrey Ely
On Jul 24, 2010, at 11:39 AM, Benjamin Root wrote: > I have to wonder why this question keeps coming up. Do we need to make the > build/installation instructions on the website clearer? Yes. I was one who asked recently. I've not seen easy_install nor pip mentioned on the website nor INSTALL

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
>> Yes, you should be worried. To run the numpy tests you need to install > nose. That's what your output said: > > ImportError: Need nose >= 0.10.0 for tests - see > http://somethingaboutorange.com/mrl/projects/nose > > For h5py, you might want to try the h5py list. Did you remove the > build di

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Keith Goodman
On Sat, Jul 24, 2010 at 3:39 PM, Jonathan Tu wrote: > > On Jul 24, 2010, at 6:21 PM, David Cournapeau wrote: > >> On Sun, Jul 25, 2010 at 7:12 AM, Jonathan Tu wrote: >> >>> >>> What does that part do?  It turns out that by fixing my library path, numpy >>> now imports.  I assume that my installa

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
On Jul 24, 2010, at 6:21 PM, David Cournapeau wrote: > On Sun, Jul 25, 2010 at 7:12 AM, Jonathan Tu wrote: > >> >> What does that part do? It turns out that by fixing my library path, numpy >> now imports. I assume that my installation of h5py doesn't need to be >> redone just because I re

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 7:12 AM, Jonathan Tu wrote: > > What does that part do?  It turns out that by fixing my library path, numpy > now imports.  I assume that my installation of h5py doesn't need to be redone > just because I reinstalled Numpy? Actually, you may have to if you installed h5p

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Keith Goodman
On Sat, Jul 24, 2010 at 3:12 PM, Jonathan Tu wrote: > > On Jul 24, 2010, at 6:09 PM, David Cournapeau wrote: > >> On Sun, Jul 25, 2010 at 7:00 AM, Jonathan Tu wrote: If you install shared libraries into a directory which is not looked in by default by ld, you should add it to the LD_LIB

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
On Jul 24, 2010, at 6:09 PM, David Cournapeau wrote: > On Sun, Jul 25, 2010 at 7:00 AM, Jonathan Tu wrote: >>> If you install shared libraries into a directory which is not looked >>> in by default by ld, you should add it to the LD_LIBRARY_PATH, e.g.: >>> >>> LD_LIBRARY_PATH=$HOME/local/lib:$L

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 7:00 AM, Jonathan Tu wrote: >> If you install shared libraries into a directory which is not looked >> in by default by ld, you should add it to the LD_LIBRARY_PATH, e.g.: >> >> LD_LIBRARY_PATH=$HOME/local/lib:$LD_LIBRARY_PATH python -c "import numpy" >> >> David > > Ok, th

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
> If you install shared libraries into a directory which is not looked > in by default by ld, you should add it to the LD_LIBRARY_PATH, e.g.: > > LD_LIBRARY_PATH=$HOME/local/lib:$LD_LIBRARY_PATH python -c "import numpy" > > David Ok, that makes sense to me. I tried to see what the current value

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 6:50 AM, Jonathan Tu wrote: > > Also, I recently tried this all again, only doing make shared, and only > using the list of libraries without "pt."  In both cases, when I ran Python > interactively and tried to load the numpy module, I got the following: import numpy

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
On Jul 24, 2010, at 5:46 PM, Jonathan Tu wrote: >> Here is what I would do for RHEL4: >> - use python 2.6, not 2.7, because the released numpy does not support 2.7 >> yet. >> - build atlas 3.8.3 and lapack 3.1.1 by yourself: this is your core >> issue here. Both lapack and atlas should be built

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
> Here is what I would do for RHEL4: > - use python 2.6, not 2.7, because the released numpy does not support 2.7 > yet. > - build atlas 3.8.3 and lapack 3.1.1 by yourself: this is your core > issue here. Both lapack and atlas should be built with the -fPIC flag > on x86_64 arch (modify the make.i

Re: [Numpy-discussion] segmentation fault when installing with pip and python2.7

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 6:21 AM, Benjamin Root wrote: > > On Sat, Jul 24, 2010 at 2:38 PM, David Cournapeau > wrote: >> >> On Sun, Jul 25, 2010 at 3:39 AM, Benjamin Root wrote: >> >> > I have to wonder why this question keeps coming up. >> >> In general, because the packaging/build infrastructur

Re: [Numpy-discussion] segmentation fault when installing with pip and python2.7

2010-07-24 Thread Benjamin Root
On Sat, Jul 24, 2010 at 2:38 PM, David Cournapeau wrote: > On Sun, Jul 25, 2010 at 3:39 AM, Benjamin Root wrote: > > > I have to wonder why this question keeps coming up. > > In general, because the packaging/build infrastructure in python is > horrible. > > However, in this precise case, the iss

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 5:18 AM, Jonathan Tu wrote: >> It shows you don't use either atlas or even simple lapack. If your >> install used atlas, the atlas libraries would show up on those .so >> with ldd, >> >> David >> > > Hmm.  Ok.  What I did for Numpy installation was check out the source code

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
> It shows you don't use either atlas or even simple lapack. If your > install used atlas, the atlas libraries would show up on those .so > with ldd, > > David > Hmm. Ok. What I did for Numpy installation was check out the source code using svn. Then I did python setup.py build where

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 5:13 AM, David Cournapeau wrote: > On Sun, Jul 25, 2010 at 5:11 AM, Jonathan Tu wrote: >> >> On Jul 24, 2010, at 4:04 PM, Keith Goodman wrote: >> >>> On Sat, Jul 24, 2010 at 12:58 PM, David Cournapeau >>> wrote: On Sun, Jul 25, 2010 at 4:50 AM, Jonathan Tu wrote: >

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 5:11 AM, Jonathan Tu wrote: > > On Jul 24, 2010, at 4:04 PM, Keith Goodman wrote: > >> On Sat, Jul 24, 2010 at 12:58 PM, David Cournapeau >> wrote: >>> On Sun, Jul 25, 2010 at 4:50 AM, Jonathan Tu wrote: >>> I am unable to find the files lapack_lite.so or _dotblas.s

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
On Jul 24, 2010, at 4:04 PM, Keith Goodman wrote: > On Sat, Jul 24, 2010 at 12:58 PM, David Cournapeau wrote: >> On Sun, Jul 25, 2010 at 4:50 AM, Jonathan Tu wrote: >> >>> I am unable to find the files lapack_lite.so or _dotblas.so. I used the >>> locate command to look for them. >> >> If y

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Keith Goodman
On Sat, Jul 24, 2010 at 12:58 PM, David Cournapeau wrote: > On Sun, Jul 25, 2010 at 4:50 AM, Jonathan Tu wrote: > >> I am unable to find the files lapack_lite.so or _dotblas.so.  I used the >> locate command to look for them. > > If you just installed numpy, locate won't find them as locate uses

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 4:50 AM, Jonathan Tu wrote: > I am unable to find the files lapack_lite.so or _dotblas.so.  I used the > locate command to look for them. If you just installed numpy, locate won't find them as locate uses a database which is usually updated once in a while. Depending on

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
On Sat 24/07/10 3:39 PM , David Cournapeau wrote: > On Sun, Jul 25, 2010 at 4:23 AM, Jonathan Tu wrote: > > > > On Jul 24, 2010, at 3:08 PM, Benjamin Root wrote: > > > > On Fri, Jul 23, 2010 at 10:10 AM, Jonathan Tu wrote: > >> > >> Hi, > >> I am trying to install Numpy on a Linux cluster

[Numpy-discussion] dtype.type for structured arrays

2010-07-24 Thread Thomas Robitaille
Hi, If I create a structured array with vector columns: >>> array = np.array(zip([[1,2],[1,2],[1,3]]),dtype=[('a',float,2)]) then examine the type of the column, I get: >>> array.dtype[0] dtype(('float64',(2,))) Then, if I try and view the numerical type, I see: >>> array.dtype[0].type I ha

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 4:23 AM, Jonathan Tu wrote: > > On Jul 24, 2010, at 3:08 PM, Benjamin Root wrote: > > On Fri, Jul 23, 2010 at 10:10 AM, Jonathan Tu wrote: >> >> Hi, >> I am trying to install Numpy on a Linux cluster running RHEL4.  I >> installed a local copy of Python 2.7 because RHEL4 u

Re: [Numpy-discussion] segmentation fault when installing with pip and python2.7

2010-07-24 Thread David Cournapeau
On Sun, Jul 25, 2010 at 3:39 AM, Benjamin Root wrote: > I have to wonder why this question keeps coming up. In general, because the packaging/build infrastructure in python is horrible. However, in this precise case, the issue is simply that numpy 1.4.1 does not support python2.7. cheers, Dav

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Jonathan Tu
On Jul 24, 2010, at 3:08 PM, Benjamin Root wrote: > On Fri, Jul 23, 2010 at 10:10 AM, Jonathan Tu wrote: > Hi, > > I am trying to install Numpy on a Linux cluster running RHEL4. I installed a > local copy of Python 2.7 because RHEL4 uses Python 2.3.4 for various internal > functionalities.

Re: [Numpy-discussion] Numpy installation problem

2010-07-24 Thread Benjamin Root
On Fri, Jul 23, 2010 at 10:10 AM, Jonathan Tu wrote: > Hi, > > I am trying to install Numpy on a Linux cluster running RHEL4. I installed > a local copy of Python 2.7 because RHEL4 uses Python 2.3.4 for various > internal functionalities. I downloaded the Numpy source code using > > svn co http

Re: [Numpy-discussion] segmentation fault when installing with pip and python2.7

2010-07-24 Thread Benjamin Root
On Sat, Jul 24, 2010 at 1:44 AM, Ralf Gommers wrote: > > > On Fri, Jul 23, 2010 at 11:46 AM, celil wrote: > >> Hello, >> >> I just installed numpy on Snow Leopard using pip. However, running the >> tests results in a segmentation fault. Has anybody else encountered this >> problem? How did you so

Re: [Numpy-discussion] f2py problem with complex inout in subroutine

2010-07-24 Thread Pearu Peterson
Hi Mark, On Mon, Jul 19, 2010 at 11:49 AM, Mark Bakker wrote: > Thanks for fixing this, Pearu. > Complex arrays with intent(inout) don't seem to work either. > They compile, but a problem occurs when calling the routine. What problem? > Did you fix that as well? I guess so, see below. > Here'

Re: [Numpy-discussion] cython/swigpyrex examples and docs

2010-07-24 Thread Pauli Virtanen
Sat, 24 Jul 2010 18:22:33 +0800, Ralf Gommers wrote: > There is a bug report asking for the example files under doc/cython, > doc/swig etc. to be included in the released binaries. This thread, > http://thread.gmane.org/gmane.comp.python.numeric.general/26913/ focus=26917, > seems to indicate the d

[Numpy-discussion] cython/swigpyrex examples and docs

2010-07-24 Thread Ralf Gommers
Hi all, There is a bug report asking for the example files under doc/cython, doc/swig etc. to be included in the released binaries. This thread, http://thread.gmane.org/gmane.comp.python.numeric.general/26913/focus=26917, seems to indicate the docs should still be integrated in the main documentat