Re: [Numpy-discussion] Convert data into rectangular grid

2009-09-28 Thread Robert Kern
On Mon, Sep 28, 2009 at 19:45, jah wrote: > Here is the desired use case:  I have a set of x,y,c values that I could > pass into matplotlib's scatter() or hexbin().   I'd like to take this same > set of points and transform them so that I can pass them into matplotlib's > contour() function.  Per

Re: [Numpy-discussion] Convert data into rectangular grid

2009-09-28 Thread jah
On Mon, Sep 28, 2009 at 4:48 PM, wrote: > On Mon, Sep 28, 2009 at 7:19 PM, jah wrote: > > Hi, > > > > Suppose I have a set of x,y,c data (something useful for > > matplotlib.pyplot.plot() ). Generally, this data is not rectangular at > > all. Does there exist a numpy function (or set of functi

Re: [Numpy-discussion] setup.py does not use the correct library

2009-09-28 Thread Robert Kern
On Mon, Sep 28, 2009 at 19:35, Peng Yu wrote: > On Mon, Sep 28, 2009 at 4:44 PM, Robert Kern wrote: >> On Mon, Sep 28, 2009 at 16:40, Peng Yu wrote: >>> I attached the script that I run for build and the build output. I >>> think that setup.py doesn't use the correct python library. But I'm >>>

[Numpy-discussion] setup.py does not use the correct library

2009-09-28 Thread Peng Yu
On Mon, Sep 28, 2009 at 4:44 PM, Robert Kern wrote: > On Mon, Sep 28, 2009 at 16:40, Peng Yu wrote: >> I attached the script that I run for build and the build output. I >> think that setup.py doesn't use the correct python library. But I'm >> not sure why. Would you please help me figure out wha

Re: [Numpy-discussion] Convert data into rectangular grid

2009-09-28 Thread josef . pktd
On Mon, Sep 28, 2009 at 7:19 PM, jah wrote: > Hi, > > Suppose I have a set of x,y,c data (something useful for > matplotlib.pyplot.plot() ).  Generally, this data is not rectangular at > all.  Does there exist a numpy function (or set of functions) which will > take this data and construct the sma

[Numpy-discussion] Convert data into rectangular grid

2009-09-28 Thread jah
Hi, Suppose I have a set of x,y,c data (something useful for matplotlib.pyplot.plot() ). Generally, this data is not rectangular at all. Does there exist a numpy function (or set of functions) which will take this data and construct the smallest two-dimensional arrays X,Y,C ( suitable for matplo

Re: [Numpy-discussion] setup.py does not use the correct library

2009-09-28 Thread Robert Kern
On Mon, Sep 28, 2009 at 16:40, Peng Yu wrote: > I attached the script that I run for build and the build output. I > think that setup.py doesn't use the correct python library. But I'm > not sure why. Would you please help me figure out what the problem is? Setting $LDFLAGS to be empty is also in

Re: [Numpy-discussion] setup.py does not use the correct library

2009-09-28 Thread Robert Kern
On Mon, Sep 28, 2009 at 16:27, Peng Yu wrote: > On Mon, Sep 28, 2009 at 2:53 PM, Robert Kern wrote: >> On Mon, Sep 28, 2009 at 14:31, Peng Yu wrote: >>> I use the following command to build numpy-1.3.0rc2. But it seems not >>> able to find the appropriate library files. Can somebody let me know

Re: [Numpy-discussion] setup.py does not use the correct library

2009-09-28 Thread Peng Yu
On Mon, Sep 28, 2009 at 2:53 PM, Robert Kern wrote: > On Mon, Sep 28, 2009 at 14:31, Peng Yu wrote: >> I use the following command to build numpy-1.3.0rc2. But it seems not >> able to find the appropriate library files. Can somebody let me know >> how to make it use the correct ones? >> >> #c

Re: [Numpy-discussion] Deprecate poly1d and replace with Poly1d ?

2009-09-28 Thread Charles R Harris
On Mon, Sep 28, 2009 at 2:59 PM, Robert Kern wrote: > On Mon, Sep 28, 2009 at 15:46, Charles R Harris > wrote: > > > The more basic problem here is making poly1d look like an array, which it > > isn't. The array bit is an implementation detail and would be private in > > C++. with an as_array me

[Numpy-discussion] The problem with zero dimesnsional array

2009-09-28 Thread yogesh karpate
Dear All, I'm facing a bog problem in following . the code snippet is as follows % Compute the area indicator### for kT in range(leftbound,rightbound): # Here the left bound and rightbound both are indexing array is

Re: [Numpy-discussion] Deprecate poly1d and replace with Poly1d ?

2009-09-28 Thread Robert Kern
On Mon, Sep 28, 2009 at 15:46, Charles R Harris wrote: > The more basic problem here is making poly1d look like an array, which it > isn't. The array bit is an implementation detail and would be private in > C++. with an as_array method to retrieve the details if wanted. I'm pretty sure that it

Re: [Numpy-discussion] numpy.reshape() bug?

2009-09-28 Thread Neil Martinsen-Burrell
On 2009-09-28 15:39 , Chris wrote: > I am trying to "collapse" two dimensions of a 3-D array, using reshape: > > (Pdb) dims = np.shape(trace) > (Pdb) dims > Out[2]: (1000, 4, 3) > (Pdb) newdims = (dims[0], sum(dims[1:])) > (Pdb) newdims > Out[2]: (1000, 7) > > However, reshape seems to think I am m

[Numpy-discussion] Deprecate poly1d and replace with Poly1d ?

2009-09-28 Thread Charles R Harris
Because poly1d exports the __array__ interface, a design error IMHO that makes it play badly with the prospective chebyshev module. For example the following should convert from a Chebyshev series to a power series chebval([1,0,0], poly1d(1,0)) and it does if I make sure to pass the poly1d as obj

[Numpy-discussion] numpy.reshape() bug?

2009-09-28 Thread Chris
I am trying to "collapse" two dimensions of a 3-D array, using reshape: (Pdb) dims = np.shape(trace) (Pdb) dims Out[2]: (1000, 4, 3) (Pdb) newdims = (dims[0], sum(dims[1:])) (Pdb) newdims Out[2]: (1000, 7) However, reshape seems to think I am missing something: (Pdb) np.reshape(trace, newdims) *

Re: [Numpy-discussion] setup.py does not use the correct library

2009-09-28 Thread Robert Kern
On Mon, Sep 28, 2009 at 14:31, Peng Yu wrote: > I use the following command to build numpy-1.3.0rc2. But it seems not > able to find the appropriate library files. Can somebody let me know > how to make it use the correct ones? > > #command > export LD_LBRARY_PATH= > export CPPFLAGS="-I$HOME/u

[Numpy-discussion] setup.py does not use the correct library

2009-09-28 Thread Peng Yu
I use the following command to build numpy-1.3.0rc2. But it seems not able to find the appropriate library files. Can somebody let me know how to make it use the correct ones? #command export LD_LBRARY_PATH= export CPPFLAGS="-I$HOME/utility/linux/opt/Python-2.6.2/include/python2.6" export LDFL

Re: [Numpy-discussion] new array type in cython?

2009-09-28 Thread Charles R Harris
On Mon, Sep 28, 2009 at 10:47 AM, Neal Becker wrote: > Robert Kern wrote: > > > On Mon, Sep 28, 2009 at 10:36, Neal Becker wrote: > >> Robert Kern wrote: > >> > >>> On Mon, Sep 28, 2009 at 06:23, Neal Becker > wrote: > Has anyone attempted a new array type in cython? Any hints? > >>> > >>

Re: [Numpy-discussion] Question about improving genfromtxt errors

2009-09-28 Thread Skipper Seabold
On Mon, Sep 28, 2009 at 1:36 PM, Pierre GM wrote: > > On Sep 28, 2009, at 12:51 PM, Skipper Seabold wrote: > >> This was probably due to the way that I timed it, honestly.  I only >> did it once.  The only differences I made for that part were in the >> first post of the thread.  Two incremented s

Re: [Numpy-discussion] Question about improving genfromtxt errors

2009-09-28 Thread Pierre GM
On Sep 28, 2009, at 12:51 PM, Skipper Seabold wrote: > This was probably due to the way that I timed it, honestly. I only > did it once. The only differences I made for that part were in the > first post of the thread. Two incremented scalars for line numbers > and column numbers and a try/exc

Re: [Numpy-discussion] [Matplotlib-users] glumpy: fast OpenGL numpy visualization + matplotlib integration

2009-09-28 Thread Rohit Garg
This is good. I have been looking forward to seeing something like this for a while. I'd be cool however, to dump a *real* python function into a vertex shader and let it do real mesh deformations. I know, it would be hard to validate if it wasn;t doing some crazy stuff. Of course, with new (ie so

Re: [Numpy-discussion] Question about improving genfromtxt errors

2009-09-28 Thread Skipper Seabold
On Mon, Sep 28, 2009 at 12:41 PM, Christopher Barker wrote: > Skipper Seabold wrote: >> FWIW, I have a script that creates and savez arrays from several text >> files in total about 1.5 GB of text. >> >> without the incrementing in genfromtxt >> >> Run time: 122.043943 seconds >> >> with the incre

Re: [Numpy-discussion] new array type in cython?

2009-09-28 Thread Neal Becker
Robert Kern wrote: > On Mon, Sep 28, 2009 at 10:36, Neal Becker wrote: >> Robert Kern wrote: >> >>> On Mon, Sep 28, 2009 at 06:23, Neal Becker wrote: Has anyone attempted a new array type in cython? Any hints? >>> >>> Are you having problems? >> >> No, haven't tried using cython for this y

Re: [Numpy-discussion] new array type in cython?

2009-09-28 Thread Robert Kern
On Mon, Sep 28, 2009 at 10:36, Neal Becker wrote: > Robert Kern wrote: > >> On Mon, Sep 28, 2009 at 06:23, Neal Becker wrote: >>> Has anyone attempted a new array type in cython?  Any hints? >> >> Are you having problems? >> > > No, haven't tried using cython for this yet.  Wondering if there are

Re: [Numpy-discussion] Question about improving genfromtxt errors

2009-09-28 Thread Christopher Barker
Skipper Seabold wrote: > FWIW, I have a script that creates and savez arrays from several text > files in total about 1.5 GB of text. > > without the incrementing in genfromtxt > > Run time: 122.043943 seconds > > with the incrementing in genfromtxt > > Run time: 131.698873 seconds > > If we j

Re: [Numpy-discussion] unpacking bytes directly in numpy

2009-09-28 Thread Christopher Barker
David Cournapeau wrote: >> However, is there a more direct way of directly transforming bytes >> into a np.int32 type without the intermediate 'struct.unpack' step? > > Assuming you have an array of bytes, you could just use view: > > # x is an array of bytes, whose length is a multiple of 4 > x.

Re: [Numpy-discussion] [Matplotlib-users] glumpy: fast OpenGL numpy visualization + matplotlib integration

2009-09-28 Thread Nicolas Rougier
Well, I've been starting working on a pyglet backend but it is currently painfully slow mainly because I do not know enough of the matplotlib internal machinery to really benefit from it. In the case of glumpy, the use of texture object for representing 2d arrays is a real speed boost si

Re: [Numpy-discussion] new array type in cython?

2009-09-28 Thread Robert Kern
On Mon, Sep 28, 2009 at 10:36, Neal Becker wrote: > Robert Kern wrote: > >> On Mon, Sep 28, 2009 at 06:23, Neal Becker wrote: >>> Has anyone attempted a new array type in cython?  Any hints? >> >> Are you having problems? > > No, haven't tried using cython for this yet.  Wondering if there are an

Re: [Numpy-discussion] glumpy: fast OpenGL numpy visualization + matplotlib integration

2009-09-28 Thread Gökhan Sever
On Mon, Sep 28, 2009 at 9:06 AM, Nicolas Rougier wrote: > > Hi all, > > glumpy is a fast OpenGL visualization tool for numpy arrays coded on > top of pyglet (http://www.pyglet.org/). The package contains many > demos showing basic usage as well as integration with matplotlib. As a > reference, the

Re: [Numpy-discussion] new array type in cython?

2009-09-28 Thread Neal Becker
Robert Kern wrote: > On Mon, Sep 28, 2009 at 06:23, Neal Becker wrote: >> Has anyone attempted a new array type in cython? Any hints? > > Are you having problems? > No, haven't tried using cython for this yet. Wondering if there are any examples. So far my experiences have been with boost:

Re: [Numpy-discussion] new array type in cython?

2009-09-28 Thread Robert Kern
On Mon, Sep 28, 2009 at 06:23, Neal Becker wrote: > Has anyone attempted a new array type in cython?  Any hints? Are you having problems? -- Robert Kern "I have come to believe that the whole world is an enigma, a harmless enigma that is made terrible by our own mad attempt to interpret it as

Re: [Numpy-discussion] numpy.numarray.transpose()

2009-09-28 Thread Pauli Virtanen
Mon, 28 Sep 2009 09:29:30 -0500, Bruce Southey wrote: [clip] > This is not a bug! This specific difference between numpy and numarray > is documented on the 'converting from numarray' page: > http://www.scipy.org/Converting_from_numarray Oh. I completely missed that page. Now, it should just be tr

Re: [Numpy-discussion] numpy.numarray.transpose()

2009-09-28 Thread Bruce Southey
On 09/28/2009 03:15 AM, Pauli Virtanen wrote: > Mon, 28 Sep 2009 10:07:47 +0200, Michael.Walker wrote: > [clip] > >> In [7]: f = f.transpose() >> >> In [8]: print f >> [[1 3] >> [2 4]] >> >> as expected. I mention this because I think that it is worth knowing >> having lost a LOT of time to

[Numpy-discussion] glumpy: fast OpenGL numpy visualization + matplotlib integration

2009-09-28 Thread Nicolas Rougier
Hi all, glumpy is a fast OpenGL visualization tool for numpy arrays coded on top of pyglet (http://www.pyglet.org/). The package contains many demos showing basic usage as well as integration with matplotlib. As a reference, the animation script available from matplotlib distribution runs

[Numpy-discussion] new array type in cython?

2009-09-28 Thread Neal Becker
Has anyone attempted a new array type in cython? Any hints? ___ NumPy-Discussion mailing list NumPy-Discussion@scipy.org http://mail.scipy.org/mailman/listinfo/numpy-discussion

Re: [Numpy-discussion] numpy.numarray.transpose()

2009-09-28 Thread Pauli Virtanen
Mon, 28 Sep 2009 10:07:47 +0200, Michael.Walker wrote: [clip] > In [7]: f = f.transpose() > > In [8]: print f > [[1 3] > [2 4]] > > as expected. I mention this because I think that it is worth knowing > having lost a LOT of time to it. Is it worth filing as a bug report? Yes. It indeed seems t

[Numpy-discussion] numpy.numarray.transpose()

2009-09-28 Thread Michael . Walker
Hello list, I just thought I'd point out a difference between 'import numarray' and 'import numpy.numarray' . Consider the following In [1]: from numpy.numarray import * In [2]: d = array((1,2,3,4)) In [3]: f = reshape(d,(2,2)) In [4]: print f [[1 2] [3 4]] In [5]: f.transpose() Out[5]: a

Re: [Numpy-discussion] Error building docs

2009-09-28 Thread Pauli Virtanen
Fri, 25 Sep 2009 12:29:30 -0400, Michael Droettboom wrote: > Anybody know why I might be seeing this? [clip] > Exception occurred:[ 0%] reference/arrays.classeslass > File "/home/mdroe/usr/lib/python2.5/site-packages/docutils/nodes.py", > line 471, in __getitem__ > return self.attributes[key