Re: [Numpy-discussion] [SciPy-user] maskedarray

2007-12-12 Thread Alan G Isaac
On Wed, 12 Dec 2007, "Travis E. Oliphant" apparently wrote: > 2) The matrix object made a C-subclass (for speed). This will probably be the last chance for such a change, so I again hope that consideration will be given to *one* change in the matrix object: iteration over a matrix should return a

Re: [Numpy-discussion] [SciPy-user] maskedarray

2007-12-12 Thread Travis E. Oliphant
Pierre GM wrote: > On Tuesday 11 December 2007 15:48:01 Tom Johnson wrote: > >> What is the status regarding 'maskedarray'? When will this become >> part (replace ma) of the standard distribution? Also, what is the >> recommended way to import sandbox modules so that code changes are >> minimi

[Numpy-discussion] linalg.lapack_lite has undefined symbols

2007-12-12 Thread Glen W. Mabey
Hello, I am converting my build scripts to use the Intel Compiler Suite, using today's svn code, on RHEL 4.0. Building numpy succeeds, but importing it fails: ImportError: /usr/local/lib/python2.5/site-packages/numpy/linalg/lapack_lite.so: undefined symbol: dgesdd_ And sure enough: [EMAI

Re: [Numpy-discussion] numpy large arrays?

2007-12-12 Thread Timothy Hochberg
On Dec 12, 2007 7:29 AM, Søren Dyrsting <[EMAIL PROTECTED]> wrote: > Hi all > > I need to perform computations involving large arrays. A lot of rows and > no more than e.g. 34 columns. My first choice is python/numpy because I'm > already used to code in matlab. > > However I'm experiencing memory

Re: [Numpy-discussion] resize in old Numeric

2007-12-12 Thread Travis E. Oliphant
Christian Meesters wrote: > Hi, > > For compatibility reasons (work with Biopython) I would like to use to > Numeric in some code of mine. (Of course, I could make a little detour > converting into numpy.array, but first I wonder whether somebody might > know a solution for the problem with Numeric

Re: [Numpy-discussion] resize in old Numeric

2007-12-12 Thread Stefan van der Walt
Hi Christiaan On Wed, Dec 12, 2007 at 07:39:49PM +0100, Christian Meesters wrote: > I need to flatten a simple 3x3 array and try to do that with resize. > First time works, next time it doesn't. Here is an example: > > In [1]: from Numeric import * > > In [2]: a = array([[ 0.50622966, -0.5476438

Re: [Numpy-discussion] resize in old Numeric

2007-12-12 Thread Timothy Hochberg
On Dec 12, 2007 11:39 AM, Christian Meesters <[EMAIL PROTECTED]> wrote: > Hi, > > For compatibility reasons (work with Biopython) I would like to use to > Numeric in some code of mine. (Of course, I could make a little detour > converting into numpy.array, but first I wonder whether somebody might

Re: [Numpy-discussion] numpy large arrays?

2007-12-12 Thread Stefan van der Walt
On Wed, Dec 12, 2007 at 03:29:57PM +0100, Søren Dyrsting wrote: > I need to perform computations involving large arrays. A lot of rows and no > more than e.g. 34 columns. My first choice is python/numpy because I'm already > used to code in matlab. > > However I'm experiencing memory problems even

[Numpy-discussion] resize in old Numeric

2007-12-12 Thread Christian Meesters
Hi, For compatibility reasons (work with Biopython) I would like to use to Numeric in some code of mine. (Of course, I could make a little detour converting into numpy.array, but first I wonder whether somebody might know a solution for the problem with Numeric.) I need to flatten a simple 3x3 ar

Re: [Numpy-discussion] Changing the distributed binary for numpy 1.0.4 for windows ?

2007-12-12 Thread Travis E. Oliphant
Fernando Perez wrote: >> I will put new binaries on the sourceforge site this weekend for both >> NumPy 1.0.4 and SciPy 0.6.0. I should be able to find an old PIII >> WinXP machine around somewhere, which I will devote to building the >> official non-SSE2 releases from here on out. >> > > Gre

Re: [Numpy-discussion] Changing the distributed binary for numpy 1.0.4 for windows ?

2007-12-12 Thread Fernando Perez
> I will put new binaries on the sourceforge site this weekend for both > NumPy 1.0.4 and SciPy 0.6.0. I should be able to find an old PIII > WinXP machine around somewhere, which I will devote to building the > official non-SSE2 releases from here on out. Great, many thanks! Keep in mind that a

[Numpy-discussion] numpy large arrays?

2007-12-12 Thread Søren Dyrsting
Hi all I need to perform computations involving large arrays. A lot of rows and no more than e.g. 34 columns. My first choice is python/numpy because I'm already used to code in matlab. However I'm experiencing memory problems even though there is still 500 MB available (2 GB total). I have cooke

Re: [Numpy-discussion] Changing the distributed binary for numpy 1.0.4 for windows ?

2007-12-12 Thread Jarrod Millman
On Dec 11, 2007 5:58 PM, Fernando Perez <[EMAIL PROTECTED]> wrote: > On Dec 11, 2007 6:45 PM, Ryan Krauss <[EMAIL PROTECTED]> wrote: > > Near as I can tell, this is still unresolved for people with non-sse2 > > machines. Is that right? > > Yup. Your more detailed testing seems to confirm the hunc