Bug#1103430: ITP: jmh -- harness for building, running, and analysing Java benchmarks

Package: wnpp Severity: wishlist Owner: Debian-Java team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-j...@lists.debian.org -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 * Package name: jmh Version : 1.37 Upstream Contact: OpenJDK Community * URL : https://op

Bug#1079340: ITP: itkgenericlabelinterpolator -- Insight Toolkit module to interpolate label images

Package: wnpp Severity: wishlist Owner: Pierre Gruet X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: itkgenericlabelinterpolator Version : 1.2.1 Upstream Contact: https://github.com/InsightSoftwareConsortium/ITKGenericLabelInterpolator

Bug#1079341: ITP: itkadaptivedenoising -- Insight Toolkit module for image denoising

Package: wnpp Severity: wishlist Owner: Pierre Gruet X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: itkadaptivedenoising Version : 0.0+git20240619.005bd0e Upstream Contact: Nick Tustison * URL : https://github.com/ntustison

Bug#1069970: ITP: libeddsa-java -- implementation of EdDSA in Java

Package: wnpp Severity: wishlist Owner: Debian-Java team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-j...@lists.debian.org * Package name: libeddsa-java Version : 0.3.0 Upstream Contact: str4d * URL : https://github.com/str4d/ed25519-java * License : CC

Bug#1050556: ITP: libfailsafe-java -- fault tolerance and resilience patterns Java library

Package: wnpp Severity: wishlist Owner: Debian Java Maintainers X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: libfailsafe-java Version : 3.3.2 Upstream Contact: Jonathan Halterman * URL : Jonathan Halterman * License : Apache-2.0 Programming L

Bug#1050170: ITP: libconcurrentunit-java -- simple toolkit for testing multi-threaded Java code

Package: wnpp Severity: wishlist Owner: Debian Java Maintainers X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: libconcurrentunit-java Version : 0.4.6 Upstream Contact: Jonathan Halterman * URL : https://github.com/jhalterman/concurrentunit * License

Bug#1049904: O: dicelab -- tool to compute the statistical distribution of dice rolls

Package: wnpp Severity: normal X-Debbugs-Cc: dice...@packages.debian.org Control: affects -1 + src:dicelab I intend to orphan the dicelab package because of a lack of interest and apparently a poor number of users. Upstream seems to be inactive as the orig website has been unreachable for many mon

Bug#1027277: ITP: glgrib -- geophysical GRIB2-encoded fields displayer using OpenGL

Package: wnpp Severity: wishlist Owner: Pierre Gruet User: debian-scie...@lists.debian.org Usertags: field..geography X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: glgrib Version : 1.0.0 Upstream Contact: Philippe Marguinaud * URL

Bug#765906: ITP: coinor-bonmin -- mixed-integer nonlinear optimization solver

Control: retitle -1 ITP: coinor-bonmin -- mixed-integer nonlinear optimization solver Control: owner -1 ! Hi, I am willing to package bonmin as it is a (optional) dependency of openturns, which I maintain. Cheers, -- Pierre OpenPGP_signature Description: OpenPGP digital signature

Bug#1022258: ITP: libmjson-java -- lean JSON Library for Java with a compact API

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: libmjson-java Version : 1.4.0 Upstream Author : Miami-Dade County * URL : https://bolerio.github.io/mjson/ * License

Bug#1021934: ITP: biojava6-live -- Java API to biological data and applications (version 6)

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: biojava6-live Version : 6.0.5 Upstream Author : BioJava Developers * URL : https://biojava.org * License : LGPL-2.1

Bug#1016046: ITP: genomicsdb -- sparse array storage library for genomics

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: genomicsdb Version : 1.4.3 Upstream Author : Intel Health and Lifesciences * URL : https://www.genomicsdb.org/ * License

Bug#1015926: ITP: persalys -- GUI for uncertainty treatment and variabilities management

Package: wnpp Severity: wishlist Owner: Pierre Gruet User: debian-scie...@lists.debian.org Usertags: field..science X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: persalys Version : 12.0.1 Upstream Author : Airbus-EDF-Phimeca * URL

Bug#1014504: ITP: ojalgo -- Java library to do mathematics, linear algebra and optimisation

Package: wnpp Severity: wishlist Owner: Debian-math team X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: ojalgo Version : 51.3.0 Upstream Author : Optimatika * URL : https://www.ojalgo.org/ * License : Expat Programming Lang: Java Description

Bug#1014344: ITP: gatk-bwamem -- interface to call Heng Li's bwa mem aligner from Java code

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: gatk-bwamem Version : 1.0.4 Upstream Author : Broad Institute * URL : https://github.com/broadinstitute/gatk-bwamem-jni/ * L

Bug#1011557: ITP: pagmo -- library for massively parallel optimisation

Package: wnpp Severity: wishlist Owner: Pierre Gruet User: debian-scie...@lists.debian.org Usertags: field..science X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: pagmo Version : 2.18.0 Upstream Author : Francesco Biscani * URL

Bug#1011068: ITP: spectra -- library for large scale eigenvalue problems

Package: wnpp Severity: wishlist Owner: Pierre Gruet X-Debbugs-Cc: debian-de...@lists.debian.org, team+m...@tracker.debian.org * Package name: spectra Version : 1.0.1 Upstream Author : Yixuan Qiu * URL : https://spectralib.org/ * License : MPL-2.0

Bug#1008572: ITP: xgboost-predictor-java -- Java implementation of XGBoost predictor for online prediction tasks

Hi Mo, Le 28/03/2022 à 22:39, M. Zhou a écrit : Hi Pierre, The original C++/Python implementation xgboost is maintained by deep learning team: https://salsa.debian.org/deeplearning-team/xgboost I have assigned the whole debian science team with maintainer access (max role) to deep learning tea

Bug#1008572: ITP: xgboost-predictor-java -- Java implementation of XGBoost predictor for online prediction tasks

Package: wnpp Severity: wishlist Owner: Pierre Gruet User: debian-scie...@lists.debian.org Usertags: field..science X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: xgboost-predictor-java Version : 0.3.1 Upstream Author : KOMIYA Atsushi

Bug#1008304: ITP: http-nio -- http/s file system provider for Java NIO.2

Hi Guillem, Le 28/03/2022 à 13:43, Guillem Jover a écrit : Hi! On Sat, 2022-03-26 at 14:59:17 +0100, Pierre Gruet wrote: Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: http-nio Version

Bug#1008304: ITP: http-nio -- http/s file system provider for Java NIO.2

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: http-nio Version : 0.1.0 Upstream Author : Daniel Gomez-Sanchez * URL : https://github.com/lbergelson/http-nio * License

Bug#1008128: ITP: gatk-fermilite -- interface to call Heng Li's fermi-lite assembler from Java code

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: gatk-fermilite Version : 1.2.1 Upstream Author : Broad Institute * URL : https://github.com/broadinstitute/gatk-fermilite-jn

Bug#1006834: ITP: aeonbits-owner -- API to handle application configuration through Java properties file

Package: wnpp Severity: wishlist Owner: Debian med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: aeonbits-owner Version : 1.0.12 Upstream Author : Luigi R. Viggiano * URL : http://owner.aeonbits.org/ * License : B

Bug#1006501: ITP: snpsift -- tool to annotate and manipulate genome variants

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: snpsift Version : 5.1 Upstream Author : Pablo Cingolani * URL : https://pcingola.github.io/SnpEff/ss_introduction/ * Licens

Bug#1005356: ITP: rockhopper -- system for analyzing bacterial RNA-seq data

Hi, Le 12/02/2022 à 06:42, Andreas Tille a écrit : Very cool! You're welcome! Eventually, all the .class files in the archive were just igv and its dependencies, so that I could remove all of them and have igv as the sole dependency of the binary package :-) Best regards, -- Pierre

Bug#1005356: ITP: rockhopper -- system for analyzing bacterial RNA-seq data

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: rockhopper Version : 2.0.3 Upstream Author : Brian Tjaden * URL : https://cs.wellesley.edu/~btjaden/Rockhopper * License

Bug#1004554: ITP: libpdfbox-graphics2d-java -- Java library to embed graphics as vector drawing in a PDF

Package: wnpp Severity: wishlist Owner: Debian Java team X-Debbugs-Cc: debian-de...@lists.debian.org, pkg-java-maintain...@lists.alioth.debian.org * Package name: libpdfbox-graphics2d-java Version : 0.34 Upstream Author : Emmeran Seehuber * URL : https://github.com/ro

Bug#1004152: ITP: malt -- sequence alignment and analysis tool to process sequencing data

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: malt Version : 0.5.2 Upstream Author : Daniel Huson * URL : https://github.com/danielhuson/malt * License : GPL-3+

Bug#1003782: ITP: megan-ce -- interactive tool to explore and analyse microbiome sequencing data

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: megan-ce Version : 6.21.1 Upstream Author : Daniel Huson * URL : https://github.com/danielhuson/megan-ce * License

Bug#930333: ITP: xerial-sqlite-jdbc -- Xerial's SQLite JDBC Driver

Control: forwarded -1 https://github.com/xerial/sqlite-jdbc/issues/705 Hello, I filed an issue in the upstream repository [0]. I am also interested in having sqlite-jdbc packaged, would be ready to help about it, but of course we cannot do anything at the moment. Best, -- Pierre [0] https

Bug#1001099: ITP: stopt -- library for stochastic optimization problems

Package: wnpp Severity: wishlist Owner: Pierre Gruet X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: stopt Version : 4.2 Upstream Author : Xavier Warin * URL : https://gitlab.com/stochastic-control/StOpt/ * License : LGPL-3 Programming Lang: C

Bug#999424: ITP: geners -- generic serialization library for C++

Hello Thaddeus, Le 10/11/2021 à 22:13, Thaddeus H. Black a écrit : On Wed, Nov 10, 2021 at 09:34:36PM +0100, Pierre Gruet wrote: Package: wnpp Severity: wishlist Owner: Pierre Gruet X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: geners Version : 1.12.0 Upstream

Bug#999424: ITP: geners -- generic serialization library for C++

Package: wnpp Severity: wishlist Owner: Pierre Gruet X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: geners Version : 1.12.0 Upstream Author : Igor Volobouev * URL : https://geners.hepforge.org/ * License : Expat Programming Lang: C

Bug#996993: ITP: biojava5-live -- Java API to biological data and applications (version 5)

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: biojava5-live Version : 5.4.0 Upstream Author : BioJava Developers * URL : https://www.biojava.org/ * License : LGP

Bug#996991: ITP: jgrapht -- Java library of graph theory data structures and algorithms

Package: wnpp Severity: wishlist Owner: Pierre Gruet User: debian-scie...@lists.debian.org Usertags: field..science X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: jgrapht Version : 1.5.1 Upstream Author : Abdallah Atouani and

Bug#996865: ITP: jheaps -- Java library with various heap implementations

Package: wnpp Severity: wishlist Owner: Debian-java team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-j...@lists.debian.org * Package name: jheaps Version : 0.14 Upstream Author : Dimitrios Michail * URL : https://github.com/d-michail/jheaps * License :

Bug#996727: ITP: ciftools-java -- Java library to read and write CIF files

Package: wnpp Severity: wishlist Owner: Debian java team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-j...@lists.debian.org * Package name: ciftools-java Version : 3.0.0 Upstream Author : Sebastian Bittrich * URL : https://github.com/rcsb/ciftools-java * License

Bug#995294: ITP: tipp -- taxonomic identification and abundance profiling tool

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: tipp Version : 1.0 Upstream Author : Siavash Mirarab * URL : https://github.com/TeraTrees/TIPP * License : GPL-3 P

Bug#992044: ITP: libgoby-java -- next-generation sequencing data and results analysis tool

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: libgoby-java Version : 3.3.1 Upstream Author : Institute for Computational Biomedicine * URL : https://github.com/CampagneLa

Bug#988879: ITP: grengine -- engine for running and embedding Groovy in a Java virtual machine

Package: wnpp Severity: wishlist Owner: Debian-java team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-j...@lists.debian.org * Package name: grengine Version : 3.0.0 Upstream Author : Alain Stalder * URL : https://www.artecat.ch/grengine * License : Apach

Bug#988531: ITP: libpf4j-update-java -- update mechanism for Java modular applications

Package: wnpp Severity: wishlist Owner: Debian-java team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-j...@lists.debian.org * Package name: libpf4j-update-java Version : 2.3.0 Upstream Author : Decebal Suiu * URL : https://pf4j.org * License : Apache-2.0

Bug#988279: ITP: libpf4j-java -- framework to turn monolithic Java applications into modular ones

Package: wnpp Severity: wishlist Owner: Debian-java team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-j...@lists.debian.org * Package name: libpf4j-java Version : 3.6.0 Upstream Author : Decebal Suiu * URL : https://pf4j.org/ * License : Apache-2.0 Pro

Bug#987946: ITP: capsule-maven-nextflow -- packaging tool for Java applications with Maven coordinates

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: capsule-maven-nextflow Version : 1.0.3.1 Upstream Author : Paolo di Tommaso * URL : https://github.com/nextflow-io/capsule-

Bug#987771: ITP: capsule-nextflow -- packaging and deployment tool for Java applications

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: capsule-nextflow Version : 1.1.0 Upstream Author : Paolo di Tommaso * URL : https://github.com/nextflow-io/capsule * Licens

Bug#986141: ITP: snpeff -- genetic variant annotation and effect prediction toolbox

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: snpeff Version : 4.3t Upstream Author : Pablo Cingolani * URL : https://pcingola.github.io/SnpEff/ * License : LGPL

Bug#956838: r-cran-rcdk_3.5.0+dfsg-1_amd64.changes REJECTED

Hi again, Le 27/11/2020 à 10:07, Andreas Tille a écrit : Control: block -1 by 975945 Hi Pierre, On Sat, Nov 21, 2020 at 10:00:08PM +, Joerg Jaspert wrote: The statement from upstream in their txt file beside is --- Sources for the utility JAR file included with this package can be found

Bug#956838: r-cran-rcdk_3.5.0+dfsg-1_amd64.changes REJECTED

Hi Andreas, Le 27/11/2020 à 10:07, Andreas Tille a écrit : Control: block -1 by 975945 Hi Pierre, On Sat, Nov 21, 2020 at 10:00:08PM +, Joerg Jaspert wrote: The statement from upstream in their txt file beside is --- Sources for the utility JAR file included with this package can be foun

Bug#974879: ITP: intervalstorej -- Java implementation of the Nested Containment List data structure

Package: wnpp Severity: wishlist Owner: Debian Java team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-j...@lists.debian.org * Package name: intervalstorej Version : 1.2 Upstream Author : Mungo Carstairs, Barton Group * URL : https://github.com/bartongroup/Interv

Bug#963630: RFP-ing libaparapi-java due to licensing issues at the moment

not seem to be harming when considering packaging aparapi itself, but it would impose restrictions on other software that might be bundled with it. We will discuss it with upstream and consider packaging later. Pierre Gruet

Bug#963630: RFS-ing libaparapi-java due to licensing issues at the moment

considering packaging aparapi itself, but it would impose restrictions on other software that might be bundled with it. We will discuss it with upstream and consider packaging later. Pierre Gruet

Bug#973568: ITP: libpj-java -- API and middleware for parallel programming in Java

Package: wnpp Severity: wishlist Owner: Debian-med project X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: libpj-java Version : 20150107 Upstream Author : Alan Kaminsky * URL : https://www.cs.rit.edu/~ark/pj.shtml * License

Bug#972554: ITP: icb-utils -- Java library of utilities to manage files and compute statistics

Package: wnpp Severity: wishlist Owner: Debian-med project X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: icb-utils Version : 2.0.1+git20161002.afee1d9 Upstream Author : Fabien Campagne * URL : https://github.com/CampagneLabora

Bug#971870: ITP: sepp -- methods using ensembles of Hidden Markov Models (HMM)

Package: wnpp Severity: wishlist Owner: Debian-med project X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: sepp Version : 4.3.10 Upstream Author : Siavash Mirarab * URL : https://github.com/smirarab/sepp/ * License : GP

Bug#969186: ITP: libreflections-java -- Java runtime metadata analysis library

Package: wnpp Severity: wishlist Owner: Debian Java team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-j...@lists.debian.org * Package name: libreflections-java Version : 0.9.12 Upstream Author : ronmamo * URL : https://github.com/ronmamo/reflections * License

Bug#969176: ITP: libdsiutils-java -- Java library of statistical and text data handling tools

Package: wnpp Severity: wishlist Owner: Debian Java team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-j...@lists.debian.org * Package name: libdsiutils-java Version : 2.6.6 Upstream Author : Sebastiano Vigna * URL : http://dsiutils.di.unimi.it * License

Bug#966299: ITP: libapfloat-java -- high performance arbitrary precision arithmetic library for Java

Package: wnpp Severity: wishlist Owner: Debian Java team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-j...@lists.debian.org * Package name: libapfloat-java Version : 1.9.1 Upstream Author : Mikko Tommila * URL : http://www.apfloat.org/apfloat_java * License

Bug#966192: ITP: libcharts4j-java -- free, lightweight charts and graphs Java API

Package: wnpp Severity: wishlist Owner: Debian Java team X-Debbugs-Cc: debian-de...@lists.debian.org, debian-j...@lists.debian.org * Package name: libcharts4j-java Version : 1.3 Upstream Author : Julien Chastang * URL : https://github.com/julienchastang/charts4j * Lice

Bug#963630: ITP: libaparapi-java -- framework for executing native Java code on the GPU

Package: wnpp Severity: wishlist Owner: Debian-med project * Package name: libaparapi-java Version : 2.0.0 Upstream Author : Gary Frost, Syncleus, Inc. * URL : http://aparapi.com/ * License : Apache-2.0 Programming Lang: Java Description : framework for

Bug#961158: ITP: distlib -- Java library of statistical distribution functions

Control: retitle -1 ITP: libdistlib-java -- Java library of statistical distribution functions Hi Scott and Andreas, Le 21/05/2020 à 06:44, Scott Kitterman a écrit : > On Thursday, May 21, 2020 12:08:44 AM EDT Andreas Tille wrote: >> At least the name of the binary package should be >> >> l

Bug#961158: ITP: distlib -- Java library of statistical distribution functions

Package: wnpp Severity: wishlist Owner: Debian-med project * Package name: distlib Version : 0.9.1 Upstream Author : Peter N. Steinmetz * URL : https://sourceforge.net/projects/statdistlib * License : GPL-2 Programming Lang: Java Description : Java libr