Bug#813840: ITP: libqcpp -- A C++ library for next-gen sequencing data quality control.

2016-02-05 Thread Kevin Murray
Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: libqcpp Version : 0.1.9 Upstream Author : Kevin Murray * URL : https://github.com/kdmurray91/libqcpp * License : LGPL Programming Lang: C++ Description : A C++ library for next-gen

Bug#810576: ITP: hail -- Efficiently extract arbitrary lines from a file or stream

2016-01-09 Thread Kevin Murray
Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: hail Version : 0.1.1 Upstream Author : Kevin Murray * URL : https://github.com/kdmurray91/hail * License : GPL Programming Lang: C Description : Efficiently extract arbitrary lines

Bug#809972: ITP: scrm -- A coalescent simulator for genome-scale sequences

2016-01-04 Thread Kevin Murray
Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: scrm Version : 1.6.1 Upstream Author : Paul R. Staab * URL : https://github.com/scrm/scrm * License : GPL Programming Lang: C++ Description : A coalescent simulator for genome-scale

Bug#806828: ITP: dawg -- program to simulate the evolution of recombinant DNA sequences

2015-12-01 Thread Kevin Murray
Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: dawg Version : 1.2.0 Upstream Author : Reed A. Cartwright * URL : http://scit.us/projects/dawg * License : GPL-2 Programming Lang: C++ Description : program to simulate the evolution

Bug#806767: ITP: libzstd -- fast lossless compression algorithm, targeting real-time compression scenarios

2015-12-01 Thread Kevin Murray
Hi Tiago and Konstantin You are both correct, yes. Sorry, and thanks for correcting this (though it's correct in d/control and d/copyright). Cheers, K On 11:41 01/12, Tiago Ilieve wrote: > Kevin, > > On 1 December 2015 at 00:33, Kevin Murray wrote: > > Package: wnpp &g

Bug#806767: ITP: libzstd -- fast lossless compression algorithm, targeting real-time compression scenarios

2015-11-30 Thread Kevin Murray
Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: libzstd Version : 0.4.0 Upstream Author : Yann Collet * URL : https://github.com/Cyan4973 * License : BSD Programming Lang: C Description : fast lossless compression algorithm Zstd

Bug#805153: ITP: libqes -- a next-gen sequencing format parsing and utility library for C

2015-11-15 Thread Kevin Murray
Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: libqes Version : 0.1.20 Upstream Author : Kevin Murray * URL : https://github.com/kdmurray91/libqes * License : GPL-3+ Programming Lang: C Description : Next-gen sequencing format

Bug#804646: ITP: partitionfinder -- programs for simultaneously choosing partitioning schemes and models of molecular evolution for sequence data.

2015-11-09 Thread Kevin Murray
X-Debbugs-CC: Debian Med Packaging Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: partitionfinder Version : 2.0.0 Upstream Author : Brett Calcott and Rob Lanfear * URL : https://github.com/brettc/partitionfinder * License : GPL-3

Bug#800358: ITP: python-sphinxcontrib.bibtex -- allows the use of Bibtex citations in sphinx documentation

2015-10-17 Thread Kevin Murray
ackage it under DPMT umbrella > I think this is just waiting on some of its dependencies I'm packaging. I'll contact the DPMT about co-maintainership. I think they are all ready for review, though there are probably issues to address. Cheers, Kevin --- Kevin Murray GPG pubkey: http

Bug#801307: ITP: pybtex-docutils -- A docutils backend for pybtex

2015-10-17 Thread Kevin Murray
team. > OK, sure, I'll contact the DPMT about this and the remainder of the python modules needed to build seqan's docs. Cheers, Kevin --- Kevin Murray GPG pubkey: http://www.kdmurray.id.au/static/A4B4EE6A.asc FPR: 656C 0632 1EAB 2C3F 3837 9767 17C2 8EB1 A4B4 EE6A

Bug#801307: ITP: pybtex-docutils -- A docutils backend for pybtex

2015-10-08 Thread Kevin Murray
e is that no-one in such teams has packaged it yet, and I am only packaging it as a build-depend of SeqAn, which is very much a Debian Med package. Though I understand if the team would rather this be maintained elsewhere. Cheers, K --- Kevin Murray GPG pubkey: http://www.kdmurray.id.au/stati

Bug#801309: ITP: python-latexcodec -- A lexer and codec to work with LaTeX code in Python.

2015-10-08 Thread Kevin Murray
Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: python-latexcodec Version : 1.0.1 Upstream Author : Matthias C. M. Troffaes * URL : https://github.com/mcmtroffaes/pybtex-docutils * License : Expat Programming Lang: Python Description

Bug#801307: ITP: pybtex-docutils -- A docutils backend for pybtex

2015-10-08 Thread Kevin Murray
Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: pybtex-docutils Version : 0.2.1 Upstream Author : Matthias C. M. Troffaes * URL : https://github.com/mcmtroffaes/pybtex-docutils * License : Expat Programming Lang: Python Description

Bug#801306: ITP: python-oset -- An ordered set data structure for Python

2015-10-08 Thread Kevin Murray
Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: python-oset Version : 0.1.3 Upstream Author : Carlos Martin, Raymond Hettinger * URL : https://gitorious.com/sleipnir/python-oset * License : BSD Programming Lang: Python Description

Bug#800358: ITP: python-sphinxcontrib.bibtex -- allows the use of Bibtex citations in sphinx documentation

2015-09-28 Thread Kevin Murray
Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: python-sphinxcontrib.bibtex Version : 0.3.2 Upstream Author : Matthias C. M. Troffaes * URL : https://github.com/mcmtroffaes/sphinxcontrib-bibtex/blob/develop/LICENSE.rst * License : BSD

Bug#799830: ITP: dwgsim -- DWGSIM is an improved short read simulator

2015-09-22 Thread Kevin Murray
Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: dwgsim Version : 0.1.11 Upstream Author : Nils Homer * URL : https://github.com/nh13/DWGSIM * License : GPLv2, MIT/X Programming Lang: C Description : DWGSIM: an improved short read

Bug#798824: ITP: snakemake -- a pythonic workflow system

2015-09-13 Thread Kevin Murray
Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: snakemake Version : 3.4 Upstream Author : Johannes Köster * URL : https://bitbucket.org/johanneskoester/snakemake * License : MIT Programming Lang: Python Description : Snakemake

Bug#794088: ITP: axe-demultiplexer -- demultiplexes DNA sequencing reads based upon 5' read barcodes

2015-07-30 Thread Kevin Murray
Package: wnpp Severity: wishlist Owner: Kevin Murray * Package name: axe-demultiplexer Version : 0.2.8 Upstream Author : Kevin Murray * URL : https://github.com/kdmurray91/axe * License : GPL3+ Programming Lang: C Description : Axe demultiplexes DNA

Bug#791395: ITP: wgsim -- Simulate whole-genome sequencing data

2015-07-04 Thread Kevin Murray
package: wnpp Severity: wishlist Owner: 'Kevin Murray' *Package Name : wgsim Version : 0.3.1-r13 Upstream Author : Heng Li *URL : https://github.com/lh3/wgsim *License : MIT *Description : wgsim simulates sequencing reads from a reference genome. Wgsim is a small tool for simulatin

Bug#776179: ITP: scythe -- Bayesian adaptor trimmer for sequencing reads

2015-01-24 Thread Kevin Murray
package: wnpp Severity: wishlist Owner: 'Kevin Murray' *Package Name : scythe Version : 0.994-1 Upstream Author : Vince Buffalo *URL : https://github.com/vsbuffalo/scythe *License : MIT *Description : Bayesian adaptor trimmer for sequencing reads I am packaging as it is a frequ