Le Sat, Jul 11, 2020 at 01:48:55PM +0900, Charles Plessy a écrit :
>
> I plan to split the mime-support package into "mailcap" (this WNPP bug)
> that will provide the mailcap system, optionally, and "media-types"
> (ITP later), which will provide /etc/mime.types (P
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
* Package name: mailcap
Version : 3.65
Upstream Author : the authors of the current mime-support package
* URL : Will be hosted on Salsa
* License : Public domain
Programming Lang: Perl
Description
-project.org/web/packages/locfit/index.html
(Please note that the bug address CCed is publicly archived)
Charles Plessy and Andreas Tille,
for the Debian Med project.
s history.
Thanks for the ping; no problem on my side.
Cheers,
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
Le Mon, Oct 26, 2015 at 12:57:58AM -0700, Afif Elghraoui a écrit :
> Hi, all,
> I've finished preparing the python-pbcommand package. This is part of
> the smrtanalysis suite for long-read DNA sequencing data analysis.
>
> git+ssh://git.debian.org/git/debian-med/python-pbcommand.git
> http://anons
bian.org/git/debian-med/python-avro.git
> http://anonscm.debian.org/cgit/debian-med/python-avro.git
>
> Would someone please upload to unstable?
Uploaded; compressed build logs attached.
Cheers,
Charles
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nomicconsensus.git
Uploaded; compressed build logs attached.
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Debian Med packaging team,
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Tsurumi, Kanagawa, Japan
pbgenomicconsensus_1.0.0-1_amd64.build.xz
Description: application/xz
its dependency chain, given the concerns of not being able to
deal with potential problems in the future.
Anyway, thanks for your intervention, and have a nice day,
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Le Sat, Aug 15, 2015 at 03:26:54PM -0700, Afif Elghraoui a écrit :
>
> I've finished preparing the first version of the pbh5tools package.
> Could someone upload to unstable please?
Hi Afif,
I uploaded it. Here are the build logs.
Have a nice day,
Charles
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Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: media-types
Version : 2.1.44
Upstream Author : Mostly Ville Skyttä , for Fedora
URL :
https://git.fedorahosted.org/cgit/mailcap.git/tree/mime.types
License : Public domain
ot to answer your proposition for taking over the
package… You are of course very welcome to do so, there is no extra permission
to ask for.
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* Package name: paraclu
Version : 9
Upstream Author : Martin C. Frith
* URL : http://www.cbrc.jp/paraclu/
* License : GPL-3+
Programming Lang: C++
Description : Parametric clustering of genomic and
ice week-end,
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these renamings harmful and illogical. The probability that
people want to use both amaps on the same machine is close to zero, and the
probability that users of both amaps will be annoyed by the rename is close to
one. I think that these renamings are applied dogmatically in a way that make
> > Il Sabato 5 Luglio 2014 13:03, Charles Plessy ha
> > scritto:
> >
> > The ‘amap-align’ package version 2.2-4 install the file ‘amap’ in
> > ‘/usr/bin’,
> > this is why I am worried about clashes.
Le Sat, Jul 05, 2014 at 12:11:37PM +0100, Gianfranco Co
?
The ‘amap-align’ package version 2.2-4 install the file ‘amap’ in ‘/usr/bin’,
this is why I am worried about clashes.
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map-align’.
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Archi
Le Sat, Dec 07, 2013 at 02:38:04PM +0100, Andreas Tille a écrit :
> Package: wnpp
> Severity: wishlist
> Owner: Andreas Tille
>
> * Package name: r-cran-locfit
> Version : 1.5-9.1
> Upstream Author : Catherine Loader
> * URL : http://cran.r-project.org/web/packages/loc
,
** this file shall be copyright (C) 2006-2008 by Adam Higerd.
/
You might consider adding it to your Debian copyright file.
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Debian Med packaging team,
http://www.debian.org/devel
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Hello everybody,
I intend to package the HTSlib, that some existing packages (samtools,
tabix) will need later.
Cheers,
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Package name: htslib
Version : 0.2
Upstream Author
week-end,
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I only found a minor error (strtoint.h -> strtoint64.h), that I corrected in
the package's git repository.
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s made.
Hi Andrii,
thanks a lot for proposing your help, and sorry that I forgot to
CC the reverse-dependent packages !
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Package: wnpp
Severity: normal
Subject: O: python-m2crypto -- a crypto and SSL toolkit for Python
> Le Mon, Sep 23, 2013 at 12:44:56PM +0900, Charles Plessy a écrit :
> >
> > m2crypto currently has 5 bugs of severity "Important", which I am not able
> > to
> &g
/CopyrightReview
I have not found explicit copyright or licence statement that would be
missing from your debian/copyright file.
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their sources in your
package to strictly conform with the DFSG. However, I am not sure if this is
strictly enforced or not.
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n of ggplot2 in Debian.
Hi Benjamin,
I went ahead and uploaded r-cran-munsell with you as the Uploader. This
is needed before uploading r-cran-scales.
Do you intend to take care of further updates ?
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Ts
Dear Benjamin,
I am contacting you about work on a r-cran-scales. Are you still interested in
it ? If yes, please contact us on the Debian Med mailing list, so that we can
coordinate an upload. As you know, we need it to update ggplot2.
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Debian Med
ke to suggest to expand the NUMA acronym somewhere
in the long description.
Have a nice week-end,
Charles
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Le Tue, Apr 09, 2013 at 09:49:25PM -0400, David Prévot a écrit :
> Package: wnpp
> Severity: wishlist
> Owner: David Prévot
> Control: block 705070 by -1
>
> * Package name: pear-aws-channel
> Version : 0~20130409
> * URL : http://pear.amazonwebservices.com/
> * License
(using the "pecan shell" command).
Bonjour Thomas,
maybe you could detail in the long description what WSGI means ?
Bon week-end,
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Le Thu, Feb 14, 2013 at 10:00:33PM -0300, gustavo panizzo a écrit :
> On 02/14/2013 08:52 PM, Charles Plessy wrote:
> >
> > there is also http://trinityrnaseq.sourceforge.net/, althouth I can not
>
> i would call it trinity-rnaseq or trinity-rna
Definitely,
but pleas
t shipped within debian) does not ship any
> binary named that way (AFAIK) and their packages have the kde- preffix
Dear Gustavo,
there is also http://trinityrnaseq.sourceforge.net/, althouth I can not
say if it will be packaged for Debian or not in the future.
Cheers,
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Debian Med
nse to upload the
latest upstream release (0.7.1) to unstable.
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Archive: http://list
Package: wnpp
Severity: normal
I request assistance with maintaining the cloud-init package.
The package description is:
System to handle early initialization of a cloud instance. Cloud-init can for
example set a default locale and a host name, generate SSH private host keys,
add SSH keys to a
Package: wnpp
Severity: normal
Following the Brian's message on debian-devel@l.d.o, I orphan mime-support.
http://lists.debian.org/CAJHDDhFGG=5K1tY=qo3sbu1bhrsnt0uvd7enmfhqce6e2-s...@mail.gmail.com
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nce picks ben,
which will cause a conflict of lesser importance as it will be solved on the
usual first-arrived-first-served basis. But the key point is that if we do not
aim at hundred thousands users for a tool, I think that we should avoid
three-letter names.
Have a nice week-end,
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to report about them.
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;s ITP. But in the package I uploaded to NEW, he is the lead
uploader anyway :)
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Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Hello everybody,
in order to get the cloud platform Eucalyptus in Debian, we need some
Java libraries. The following source package brings them all at once.
We recognise that it is not ideal, but it is the only way to not
postpone the
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
* Package name: libnetty3.1-java
Version : 3.1.0.CR1
Upstream Author : Red Hat Middleware LLC, and individual contributors
* URL : http://www.jboss.org/netty
* License : LGPL-2.1+
Programming Lang: Java
y, but once GRUB 2 can replace it in all cases, this may
happen. So it is probably better to have a menu.lst-builder script for
pv-grub maintained somewhere else. The pkg-xen project on Alioth is a good
idea indeed.
Or maybe pv-grub could be extended to parse menu.cfg files ? But I do not
kno
TFBS that seem statistically most unlikely to be observed by chance.
>
Hello everybody,
we have a problem... EMBOSS also distributes a program called pscan, as well as
the "pscan" package itself (Format string security checker for C files).
Cheers,
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Debian Med pack
or package installation and automatic
refreshing when a new kernel is installed.
update-grub-legacy-ec2 is derived from update-grub scripts that are also
Debian-specific. But if they could be replaced by something more generic, that
would be great. I guess the next step is to look at how Fedora does...
, etc. are very welcome.
Cheers,
-- Charles
Source: cloud-init
Section: admin
Priority: optional
Maintainer: Python Applications Packaging Team
Uploaders: Charles Plessy
Build-Depends: cdbs (>= 0.4.90~),
debhelper (>= 9),
po-debconf,
py
eful ? I am still looking
for a sane place for the Amazon EC2 public certificate, see
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=573857
I also welcome comments.
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Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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ot;EBNF"
acronyms in the long description.
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nse to have a
common one (drafted as a DEP ?).
PS: for the new debian-cran prepository, please consider using the magic tilde
in the version numbers.
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Le Tue, Feb 14, 2012 at 10:35:57AM -0800, Don Armstrong a écrit :
> On Tue, 14 Feb 2012, Charles Plessy wrote:
> > Package name: vegan
>
> New R packages shouldn't be added with a source name that does not
> match the single binary package that they produce. Please
Le Tue, Feb 14, 2012 at 01:04:22PM +0100, Andreas Tille a écrit :
> Hi Charles,
>
> the description is a bit sparse for the package itself as for the task
> where I would like to include it. Could you please try to be a bit
> more verbose for the general Debian user audience?
How about this ?
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: vegan
Version : 2.0-2
Upstream Author : Jari Oksanen, F. Guillaume Blanchet, Roeland Kindt, Pierre
Legendre, Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M.
Henry H. Stevens, H
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: permute
Version : 0.6-3
Upstream Author : Gavin L. Simpson
URL : http://cran.r-project.org/web/packages/permute/
License : GPL-2
Programming Lang: R
Description : R functions
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: umegaya
Version : 0
Upstream Author : Charles Plessy
URL : http://upstream-metadata.debian.net/
License : BOLA-1.1
Programming Lang: Perl
Description : Umegaya is a MEtadata
Le Fri, Oct 14, 2011 at 11:31:15AM +0800, Jason Heeris a écrit :
> Subject: O: soundconverter -- GNOME application to convert audio files into
> other formats
> Package: wnpp
> Severity: normal
>
> I intend to orphan the soundconverter package.
>
> I'm not using or contributing to Debian any lon
distributed in the debian-policy
package uses extensively the word “paragraph” instead of “stanza”, perhaps you
could either update the terminology in your documentation or add a note that
stanza and parargraph are synonymous.
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d (and maybe also GUI and *-RPC).
Have a nice day,
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Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: (lib)snappy-java
Version : 1.0.3
Upstream Author : Taro L. Saito
URL : http://code.google.com/p/snappy-java/
License : Apache Licence Version 2.0
Programming Lang: Java
Description
Le Wed, Jun 29, 2011 at 08:14:29AM +0200, Andreas Tille a écrit :
>
> for me this looks like a precondition for something else but not
> directly something for the tasks pages. If I'm wrong, could you
> insert it on the proper place?
Hi Andreas,
it is in our statistics task. We use it at work
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: pvclust
Version : 1.2-2
Upstream Author : Ryota Suzuki , Hidetoshi Shimodaira
URL : http://www.is.titech.ac.jp/~shimo/prog/pvclust/
License : GPL-2+
Programming Lang: R
Le Wed, Jun 08, 2011 at 10:54:53PM +, The Fungi a écrit :
> On Wed, Jun 08, 2011 at 05:53:06PM +0600, Andrey Rahmatullin wrote:
> > On Wed, Jun 08, 2011 at 08:02:34PM +0900, Charles Plessy wrote:
> > > shuffle will randomize the order of lines in a file. In other
> >
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: filo
Version : 1.1.0
Upstream Author : Aaron Quinlan, University of Virginia; Assaf Gordon, Cold
Spring Harbor Laboratories
URL : https://github.com/arq5x/filo
License : GPL-2.0
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: bedtools
Version : 2.12.0
Upstream Author : Aaron Quinlan
URL : http://code.google.com/p/bedtools/
License : GPL-2+
Programming Lang: C++
Description : suite of utilities for
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: r-bioc-edger
Version : 2.2.5
Upstream Author : Mark Robinson , Davis McCarthy
, Gordon Smyth
URL :
http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
License : LGPL-2
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: r-bioc-limma
Version : 3.8.2
Upstream Author : Gordon Smyth
URL : http://bioinf.wehi.edu.au/limma/
License : GPL, LGPL
Programming Lang: R, C
Description : linear models for
Dear Alex,
As the Perl transition is over, I have updated libbam to serve its headers in
/usr/include/samtools, and libbio-samtools-perl to search for them there.
You can go ahead with a similar change in cufflinks any time you like.
Have a nice day,
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Debian Med packaging
you or anybody else would like to go ahead and
update the package, you are most welcome ! I can add you to the pkg-eucalyptus
group any time.
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SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
OF THE POSSIBILITY OF SUCH DAMAGE.
uses LGPL-2.0 and LGPL-2.0+, but gives the boilerplate
for LGPL-2.0 only.
2) The LGPL-2.0 is actually the “Library” GPL, not the “Lesser” GPL: you are
using the boilerplate from the LGPL-2.1.
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Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: fastx-toolkit
Version : 0.0.13
Upstream Author : Assaf Gordon
URL : http://hannonlab.cshl.edu/fastx_toolkit/
License : AGPL-3+, MIT
Programming Lang: C
Description : FASTQ/A
://git.debian.org/?p=collab-maint/cctools.git
http://git.debian.org/?p=pkg-exppsy/cctools.git
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with a
retitle 429610 ITP: gbrowse -- The Generic Genome Browser from GMOD
owner 429610 !
thanks
I am not working much on this package personally, but others do. They are of
course welcome to take over the ITP.
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time, in case the package were rejected for the
errors above.
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Arc
,
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>From 834882274f79a91a6e778dce2fd3ba80fb29 Mon Sep 17 00:00:00 2001
From: Charles Plessy
Date: Sat, 19 Feb 2011 15:33:01 +0900
Subject: [PATCH] =?UTF-8?q?Document=20the=20license=20and=20copyright=20of=20=E2=80=98m4/ac=5Fc99=5Ffunc=5F*.m4=E2=80
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Hello everybody,
I will package some bioinformatics tools called FASTX-Toolkit, and they
require a separate library, gtextutils, which is used only by them. But
since it is distributed as a separate tarball, the simplest is still
to
Le Fri, Feb 04, 2011 at 03:00:26PM +0100, Christoph Martin a écrit :
>
> Am 04.02.2011 01:43, schrieb Charles Plessy:
> >
> > By the way, I think that in your changelog, the ITP bug number is wrong:
> > 321720
> > instead of 551338.
>
> I can't see the
ion as it is.
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sources in your
package to strictly conform with the DFSG. If you picked these icons from a
collection, you need in addition to credit their author and check that their
license is compatible with the GPLv3, and of course document this in
debian/copyright.
Have a nice day,
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Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: sra-sdk
Version : 2.0.0rc1
Upstream Author : National Center for Biotechnology Information (U. S. A.)
URL :
http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=so
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: tabix
Version : 0.2.3
Upstream Author : Heng Li
URL : http://samtools.sourceforge.net/tabix.shtml
License : MIT/X
Programming Lang: C, plus some Java, python and Perl bindings
Sun, Jul 11, 2010 at 12:03:36AM +0900, Charles Plessy wrote:
> >
> > 1) files/okasha-docbook.css is not documented in your copyright file
> > (Copyright 2003 Tammy Fox, Garrett LeSage, and Red Hat, Inc.
> > Copyright 2005 Tommy Reynolds
> > License: GPL )
&
”: It may cause headaches
if you would like to forward patches or files (manpages, …), that would be
GPLv3+ unless stated otherwise.
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Fortunately, I have not found any problem with your copyright file :)
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welcome to help or take over.
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Charles Plessy
Debian Med packaging team
Tsurumi, Kanagawa, Japan
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-compliant way.
Please do not hesitate to express your interest in this package in order to
make me work harder on it !
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Charles Plessy
Debian Med packaging team
Tsurumi, Kanagawa, Japan
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ate the possibilities
of their programs.
Have a nice day,
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Charles Plessy
Debian Med packaging team
Tsurumi, Kanagawa, Japan
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welcome, but there are issues about
which section clamz should go in.
Have a nice day,
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Charles Plessy
Tsurumi, Kanagawa, Japan
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A
information from http://bugs.debian.org/557199 to
http://wiki.debian.org/ACCEPT-FAQ.
Have a nice day,
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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ersions of the Apache Software License, ant tasks can not be
> licensed
> under the GPL.
Dear Miguel,
this information is outdated as the GPL version 3 is compatible with the Apache
License version 2.0, see: http://www.apache.org/licenses/GPL-compatibility.html
Have a nice day,
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Charl
CCed the person who seems to care most for this package.
If you NMU this package, may I suggest to orphan it and put it in collab-maint?
I offer to do the work if you like the idea (svn or git, just let me know).
Cheers,
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Charles Plessy
Tsurumi, Kanagawa, Japan
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recommend doc-central, libsuitesparse-doc and gnumed-client.
I have filed bugs on them to loosen the dependancy to suggest or drop it, since
these package do not particuarly need doc-central and it is already suggested
by the doc-base package.
Have a nice day,
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Charles Plessy,
Tsurumi, Kanagawa
hing if I am not sure it would not be
accepted as a new package.
Have a nice day,
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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ta format
is not less obscure as a .csv.gz format. Both need an command line to be
transformed to csv format.
I hope I have not been confusing. If you would like external opinion, I suggest
to contact to our Debian expert Dirk Eddelbuettel (e...@debian.org). His work on
and with R is reckognised i
Le Wed, Dec 16, 2009 at 12:05:45AM +0900, Charles Plessy a écrit :
>
> Dear Andreas and FTP team,
>
> more than ASCII format, what we need is the preferred form for making
> modifications. Binary format by itself is not a problem since there is no loss
> of information between
the missing COPYING file, while I am very confident that there is no doubt
this package is licensed under the GPL version 2, I note that most other R
packages do indeed have a COPYING or a LICENSE file, and that therefore it
would be
worthwile asking a clarification to the authors.
Have a nice day,
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from Debian since Lenny.
Have a nice day,
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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Le Thu, Nov 26, 2009 at 12:12:35PM +0100, Xavier Oswald a écrit :
> On 19:54 Thu 26 Nov , Charles Plessy wrote:
> >
> > I just injected libextutils-manifest-perl in your SVN repository. Given the
> > concerns I expressed above, I would like to see a green light before
Le Wed, Nov 25, 2009 at 09:18:50AM +0900, Charles Plessy a écrit :
>
> I intend to package the ExtUtils::Manifest Perl module. It is already packaged
> in the perl-modules packages, but in Lenny the provided version is too low to
> allow backports of one package of mine that w
Package: wnpp
Severity: wishlist
Owner: Charles Plessy
Package name: libextutils-manifest-perl
Version : 1.57
Upstream Author : Andreas Koenig andreas.koe...@anima.de
URL : http://search.cpan.org/~rkobes/ExtUtils-Manifest-1.57/
License : Perl
of a program I
package to remove a similar clause, by referring to the following essay on the
FSF website: http://www.fsf.org/licensing/essays/bsd.html. Maybe you can give
it a try?
Have a nice day,
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Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi,
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