Re: Strange .bashrc Problem

2018-04-25 Thread Stephen P. Molnar
Thanks for the reply. Adding the lines from your .bash_profile to mine restored the functionality of .bashrc. I don't have any backups of .bash_profile, but I would guess the the HEX installation script woped out the origional .bash_profile. ( I try to never assume anything as we all know h

Re: Strange .bashrc Problem

2018-04-25 Thread Greg Wooledge
On Wed, Apr 25, 2018 at 10:49:52PM +0300, Abdullah Ramazanoglu wrote: > It seems like when ~/.bash_profile did not exist, then ~/.bashrc is called > directly. That's not correct. As a LOGIN shell, bash reads ONE file, searching among the following items in sequence: a) ~/.bash_profile b) ~/.bash

Re: Strange .bashrc Problem

2018-04-25 Thread Greg Wooledge
On Wed, Apr 25, 2018 at 03:34:02PM -0400, Stephen P. Molnar wrote: > Bu bumbling about I discovered > the it is necessary to source .bashrc inorder to recticate the alias lines > in .bashrc (note: commenting out the added lines in .bash_profile did not > solve the problem). > > What's going on wh

Re: Strange .bashrc Problem

2018-04-25 Thread Abdullah Ramazanoglu
On Wed, 25 Apr 2018 15:34:02 -0400 Stephen P. Molnar said: > What's going on what is the fix? It seems like when ~/.bash_profile did not exist, then ~/.bashrc is called directly. However, when ~/.bash_profile did exist, then it is called *instead of* ~/.bashrc and it is up to ~/.bash_profile to s

Re: Strange .bashrc Problem

2018-04-25 Thread Andy Smith
Hello, On Wed, Apr 25, 2018 at 03:34:02PM -0400, Stephen P. Molnar wrote: > Whie the additional lines are necessary for the execution of HEX they seem > to have wiped oour all of the alias entries I have in .bashrc. Rebooting > the system does not eliminate the problem! Bu bumbling about I disco

Strange .bashrc Problem

2018-04-25 Thread Stephen P. Molnar
I am running Debian Stretch on my 64-bit Linux platform. I have just installed the molecular docking program HEX. The installation program added the line shown below to .bash_profile: # # Lines added by 'hex_setup.bin' for Hex 8.0.0 # export HEX_ROOT=/home/comp/Apps/Hex export HEX_VERSION=8.