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Installing Debian ~ A personal complication

I have a new computer at home on which I'd like to install Debian. Now this new PC has a 30Gb and a 15Gb hard disks. It has also come with American Megatrends Hyperdisk ver2.1 installed running RAID 0. The hard disks run off an additional SCSI controller off the BIOS. The upshot of all this is whe