, I could try by
downloading the proprietary nvidia driver
-- Forwarded message -
From: Francesco Pietra
Date: Sun, Nov 20, 2022, 7:07 PM
Subject: CUDA error cudaStreamSynchronize(stream) and CUDA error in
ComputeBondedCUDA
To: debian-users
Hello
Main board GA-X79-UD3 with two
illegal
> memory access was encountered
> [Partition 0][Node 0] End of program
>
"illegal memory access" is a software error (as also proven by using
alternatively one of the two GPUs) that escapes all my attempts at
unraveling its origin. I had no clues from NAMD forum. Hope here.
Thanks for your kind attention
francesco pietra
With debian 11 bullseye I encounter illegal mem access when trying to carry
out molecular dynamics on two GTX 680. On the same linux box no such error
was encountered with debian 10. The error arose with upgrading to 11'
Thanks for advice
FATAL ERROR: CUDA error cudaStreamSynchronize(stream) in f
Thanks a lot. I had taken another way, frustrated by avogadro, but as soon
as possible l'll be back to avogadro with your suggestions
On Fri, Mar 4, 2022, 3:18 PM Dan Ritter wrote:
> Francesco Pietra wrote:
> > Yes 1.93. I read that this is also called avogadro2, but I may be wro
Yes 1.93. I read that this is also called avogadro2, but I may be wrong.
At any event, the real question is how to have working plugins with the
avogadro version supplied by bullseye
thanks. Downloading plugins, and then?
fp
On Fri, Mar 4, 2022 at 8:52 AM Dan Ritter wrote:
> Francesco Pie
With bullseye avogadro2 requires calling plugins to carry out simple tasks.
I was unable to install them. Howto?
If it is a bug, or incomplete package, how to replace avogadro2 with the
old avogadro?
thanks
francesco pietra
l mem access" is a software not
hardware problem.
What could I do? Perhaps running something else than NAMD, may be a game
involving the GPUs?
Thanks for advice
francesco
-- Forwarded message -
From: Francesco Pietra
Date: Mon, Jan 17, 2022 at 3:50 PM
Subject: Re: namd-
as 2GB of memory, and so depending on your system
> size you may run yourself out of memory.
>
>
>
> -Josh
>
>
>
> *From: * on behalf of Francesco Pietra <
> chiendar...@gmail.com>
> *Reply-To: *"nam...@ks.uiuc.edu" , Francesco Pietra <
> chie
downwards.
I alsoo add that the box is at CUDA 11.2
-- Forwarded message -----
From: Francesco Pietra
Date: Mon, Jan 17, 2022 at 4:15 AM
Subject: nvidia issue with namd12 Debian 11
To: NAMD , debian-users
With a Debian 11 box with two GTX 680 I am unable to get them working. The
p
have also reconfigured the xserver, at no avail.
I have noticed issues about namd12/nvidia on the web, apparently
unresolved.
Thanks for advice
francesco pietra
, at the
linux prompt, no network with the H81M-K. Command
# dhclient
also fails to establish network.
Thanks for suggesting where correcting.
francesco pietra
cesco
On Sat, Oct 12, 2013 at 11:36 PM, Bob Proulx wrote:
> Francesco Pietra wrote:
> > I hope not to bother beyond the limit, but the security of mirror raid is
> > something of utmost importance, at least in my work of biochemist, with
> > very limited ability in recovering
o in the recent past.
The "pipe" command that I described before proved equivalent to what you
described, i.e., physically testing whether grub is installed, each disk at
a time.
Thanks a lot
francesco
-- Forwarded message ------
From: Francesco Pietra
Date: Tue, Oct 8, 20
mputers.
(2) Is the above pipe test (that grub installed leads to some message when
failure is encountered, while no message means no grub available) always
reliable and equivalent to detaching disks?
thanks
francesco
On Mon, Oct 7, 2013 at 10:38 PM, Bob Proulx wrote:
> Francesco Piet
;
> With both servers, the system boots straightforwardly to the linux prompt,
> then, if I need the X server and manager, I command "startx" and then
> "gnome-session"
>
thanks
francesco
On Sun, Oct 6, 2013 at 10:40 PM, Bob Proulx wrote:
> Francesco Pietra wrote
fferent, taken from a dismissed four-sockets
dual-core AMD server.
cheers
francesco
On Fri, Oct 4, 2013 at 10:13 PM, Bob Proulx wrote:
> Francesco Pietra wrote:
> > Bob Proulx wrote:
> > > After installing simply run the grub install script against both
> > > di
ecure as with a bad raid1.
Failure that I described in adding grub to the other HD was in a single
trial and now the HDs are different, taken from a dismissed four-sockets
dual-core AMD server.
cheers
francesco
On Fri, Oct 4, 2013 at 10:13 PM, Bob Proulx wrote:
> Francesco Pietra wrote:
stem disk. You most likely want RAID1
> (mirroring) instead. The answer above is the same regardless. If you
> are thinking striping for performance instead I recommend using an SSD
> for the system disk.
Ah! my mistake. Sure, raid1 (mirroring)
thanks
francesco
On Fri, Oct 4, 2013 at
Hello:
Did you use a recent version of the installer? What I would like to know -
before reinstalling everything on my servers - is whether the option to set
grub on both disks of raid 0 has now been introduced.
Thanks
francesco pietra
Hello:
I started this thread not because grub on both disks should be by default
but because I found difficulties in recovering. If I performed badly, and
there is no problem in installing grub on the working disk, then I see no
problem. There are many raids, not limited to raid1. Perhaps it is bec
ay 2, 2013 at 3:06 PM, Teemu Ikonen wrote:
> On Wed, May 1, 2013 at 8:38 AM, Francesco Pietra wrote:
>
>> I was looking for some sort of i-device that could allow whifi, directed
>> to reading-downloading literature and be capable of talking - via ssh/scp -
>> with my wo
, although it focuses on the low price and, therefore, it offers
modest performance. Probably inadequate to the task. Also impractical, as
it has no integrated monitor, and HDMI port only (no VGA), which, per se,
swamps out the low price.
Thanks for suggesting a more appropriate i-device.
francesco
On Sun, Apr 14, 2013 at 11:34 PM, Bob Proulx wrote:
> Francesco Pietra wrote:
> > Is any official (= working) advice on getting java at work with wheezy
> > (specifically in amd64, if relevant)?
>
> http://wiki.debian.org/Java
>
> > What should be installed/recon
libmozjs10d
I am not playing with java (useless in the scientific area), however many
molecular structures are shown on the web which require java.
Thanks
francesco pietra
pietra
-- Forwarded message --
From: Francesco Pietra
Date: Thu, Mar 14, 2013 at 6:53 PM
Subject: Fwd: Linking lapack and C standard library
To: amd64 Debian , debian-users
As to the problem of linking lapack, I wonder whether this is because
it deal of a C-language code
As to the problem of linking lapack, I wonder whether this is because
it deal of a C-language code, requiring a fine-tuned calling. Is any C
interface to lapack in Debian?
thanks
francesco
-- Forwarded message --
From: Francesco Pietra
Date: Thu, Mar 14, 2013 at 6:35 PM
Subject
ted both
on "patching" and on "make depends":
plugin.inc:39: *** missing separator. Stop
DONE!
does not point to a remedy.
francesco
------ Forwarded message --
From: Francesco Pietra
Date: Thu, Mar 14, 2013 at 3:54 PM
Subject: Re: Linking lapack and C standa
ian, though one never knows where the files are.
Thanks
francesco
On Thu, Mar 14, 2013 at 1:19 PM, João Luis Meloni Assirati
wrote:
> Em 14-03-2013 08:54, Francesco Pietra escreveu:
>
>> Please see my previous answer, and action.
>>
>> Directions how to compile that
Hello
May I ask how to correctly link lapack and C standard libraries with
Debian amd64 wheezy?
Packages installed: liblapack3gf liblapack3 libblas3 libc6 libc6-dev
**
The code to compile makes a generic example:
LIBS="-llapack -lstdc++"
thanks
francesco pietr
On Wed, Mar 6, 2013 at 9:03 PM, Lennart Sorensen
wrote:
> On Wed, Mar 06, 2013 at 08:03:12PM +0100, Francesco Pietra wrote:
>> Sorry, I forgot both the list and the appropriate output;
>>
>> root@:/home/francesco# fdisk -l
>>
>> Disk /dev/sda: 500.1 GB, 50
rest status.
"grub-install /dev/sdb" was run with that situation (deriving from
install with amd64 wheezy B$ installer downloaded on Feb 1, 2013. That
installation ended with
grub-install /dev/sda
update grub
Thanks
francesco pietra
On Wed, Mar 6, 2013 at 7:02 PM, Shane Johnson
wrote:
On Wed, Mar 6, 2013 at 8:38 AM, Bob Proulx wrote:
> Francesco Pietra wrote:
>> Bob Proulx wrote:
>> > Francesco Pietra wrote:
>> >> Thanks so much for this manual. Unfortunately, I have no more the
>> >> initial situation (one HD replaced) because I
On Tue, Mar 5, 2013 at 7:30 PM, Bob Proulx wrote:
> Francesco Pietra wrote:
>> Thanks so much for this manual. Unfortunately, I have no more the
>> initial situation (one HD replaced) because I was hurried by an editor
>> to provide computational data from my CUDA server. I d
ub asks where to install, you should configure it for both sda
>> and sdb. I think 'dpkg-reconfigure grub-pc' is where that is
>> selected. Might need it to use -plow to asks all levels of questions.
>> Not sure.
>
> +1 for this suggestion. This is definitely the way to
ely, because prefix/root/ are now wrong.
The only care I exerted, was not to work with the machine where I have
my data, until the damaged machine is in order again. At any event,
how to install safely GRUB on both disks of a RAID1 is a must.
Thanks for your kind advice.
francesco pietra
As to md
A further piece on information. With knoppix 7.0, the procedure for
examining mdadm arrives at
cat /proc/partitions
sda
sdb
RAID1 (md0 md1) is not seen. I assume that this is the way Knoppix
behaves in this situation.
Thanks
francesco pietra
-- Forwarded message --
From
swap EXT3)
Thanks a lot for your kind advice
francesco pietra
On Fri, Mar 1, 2013 at 10:35 PM, Lennart Sorensen
wrote:
> On Fri, Mar 01, 2013 at 08:20:09PM +0100, Francesco Pietra wrote:
>> Hi:
>> With a raid1 amd64 wheezy, one of the two HDs got broken.
>> Unfortunatel
bootable? (which should
be included by default, in my opinion)
Thanks
francesco pietra
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Hello:
I would like to continue to use a 32bit graphical program based on
OpenGL. It worked well on i386, requiring libXm.so.3 (from libmotif3).
Is it conceivable to simply add libXm.so.3 (taken from my dismissed
i388 PC) to ia32-libs?
Thanks for advice
francesco pietra
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onverge to microsoft/apple the more and
more.
francesco
On Sat, Aug 25, 2012 at 7:25 AM, Chris Bannister
wrote:
> On Fri, Aug 24, 2012 at 03:34:35PM +0200, Francesco Pietra wrote:
>> I suggest that in Debian mirrors, gnome is so arranged that launching
>> it be an optional. In computat
ors, gnome is so arranged that launching
it be an optional. In computational chemistry/biochemistry,
particularly with amd64, most work is at the linux prompt. Now, with
the advent of CPU-GPU systems, the graphic interface is used with
servers ans testing version, too. But only at certain stages.
Tha
Hi all:
Package wxmacmolplt on wheezy is broken. It currently requires
libglew1.6, while libglew1.7 is currently installed.
thanks
francesco pietra
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the KCrash backend
[1]+ Stopped okular
francesco@deb32:~$
-- Forwarded message ------
From: Francesco Pietra
Date: Mon, Jul 2, 2012 at 3:52 PM
Subject: i386 testing: java not recognizing its libraries and
libreoffice not launching
To: debian-users
Following upda
ul to any
purpose. I had to install okular and k3b, making the complex even more
complex. With such stuff as gnome, which even pretends to take care of
upgrading, newcomers will not even learn how to mount a device.
Thanks for advice about libreoffice
francesco pietra
PS: I am not at the stable i3
.
Should my experience be representative, it would be better not to
propose text editors that are unable to do what they should.
Cheers
francesco pietra
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mple. This requires
the extra work of labeling all messages, one by one, to delete them.
Also, although I installed version 7, java does not work with the web.
Separately I have mozilla firefox'. launching it, google mail does not
complain and the above said key exists.
Thanks for your kind atten
Gary Dale rogers.com> writes:
>
> On 13/05/12 01:28 PM, Francesco Pietra wrote:
> > Hi
> >
> > Installation of openjdk-6-jdk in wheezy i386 would lead to deletion of
> > much gnome, including openoffice, with reinstallation of gnome and
> > abiword,
certain
scientific software. How to eliminate all web browser to leave
Mozilla Firefox?
thanks
francesco pietra
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Hi
Installation of openjdk-6-jdk in wheezy i386 would lead to deletion of
much gnome, including openoffice, with reinstallation of gnome and
abiword, but not of openoffice/libreoffice, if I understand.
Otherwise, java is often useful.
Any suggestion about?
thanks
francesco pietra
--
To
ll HD (to spare money for servers) I am
having problems of disk space, while most of gnome is not useful to me
and gnome 3, installed following uninstall of gnome in wheezy, is
giving so many troubles.
thanks for advice
francesco pietra
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-- Forwarded message --
From: Francesco Pietra
Date: Mon, Nov 28, 2011 at 11:46 AM
Subject: Re: installer fails to configure DHCP
To: Vasileios Karaklioumis
The router works fine with the computer I was referring to and with
all other computers. It is the same that in the past
aller; Maintainer for debian-installer is Debian
Install System Team ; Source for
debian-installer is src:debian-installer.
Reported by: "Alexander V.Inyakin"
Date: Wed, 18 Mar 2009 16:54:01 UTC
francesco pietra
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wi
I would be grateful for instructions how to prevent gnome3 (i386
wheezy) autosuspending. I tried from /usr system wide by either
commenting out or false/true, at no avail
thanks
francesco pietra
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-OXY_colvars.in
and many other in between before:
min-01_02.conf
That should be corrected, or information given which alternative file
browser could be used to get the alphabetically correct order (like
from the terminal window, where all min* files are grouped together)
Thanks
francesco pietra
-----
From: Francesco Pietra
Date: Sun, Jun 26, 2011 at 11:10 PM
Subject: On upgrading to wheezy neither printer nor scanner work anymore.
To: debian-users
I have dist upgraded from squeeze to testing (wheezy) 32 bit, getting
the linux image and headers 2.6.39-2-686-pae, gnome 2.30.2.
Attached
ded message --
From: Francesco Pietra
Date: Sun, Jun 26, 2011 at 11:26 PM
Subject: Fwd: On upgrading to wheezy neither printer nor scanner work anymore.
To: debian-users
Perhaps relevant to the problems in this thread:
deb32:/home/francesco# hp-plugin
HP Linux Imaging and Printing System (
:initable_init:
assertion failed: (connection->initialization_error == NULL)
Aborted
deb32:/home/francesco#
-- Forwarded message --
From: Francesco Pietra
Date: Sun, Jun 26, 2011 at 11:10 PM
Subject: On upgrading to wheezy neither printer nor scanner work anymore.
To: debian-users
proc/bus/usb does not exist.
Thanks for advice
francesco pietra
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urner with debian-gnome.
thanks for your attention
Francesco Pietra
Accademia Lucchese di Scienze Lettere e Arti
I-55100 Lucca.
email chiendar...@gmail.com or francesco.pie...@accademialucchese.it
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to install Adobe. I
believe that gnome developers should consider these observations.
Lukily, okular can be used without problems even in gnome.
Thanks
francesco pietra
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Solved through LinuxQuestions forum. Forget about this thread.
fp
On Tue, Apr 6, 2010 at 4:46 PM, Francesco Pietra wrote:
> Following "apt-get dist-upgrade" with debian squeeze i386, upgrading
> from kernel 2.6.30 to 2.6.32, the xserver was broken at "startx"
> bec
Please see at bottom the successful log for 2.6.30 kernel. The
difference is at line 122. I do not understand why even the log for
2/5/32 says first that the nvidia module was loaded and then (line
122) that it can't be found
-- Forwarded message --
From: Francesco Pietra
nstaller
installation of the driver). Now I am using the 2.6.30 kernel with the
installation for 2.6.32, which is too bad.
thanks
francesco pietra
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to be constructive, so that I have extended
this reply to Debian and Vincenzo, who kindly tried to help.
Have a nice day
francesco
On Mon, Mar 1, 2010 at 12:40 AM, Jameson Rollins
wrote:
> On Sun, 28 Feb 2010 19:30:32 +0100, Francesco Pietra
> wrote:
>> What about acroread in squee
nding 64-bit machines with lenny to have such
packages. Curious about the reason why squeeze has no efficient pdf
reader.
thanks
francesco pietra
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opt, now that /boot, /, and swap have been formatted.
Previously, I installed by formatting everything of the above scheme.
Thanks
francesco pietra
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Following
mkdir /var/spool/gfax/francesco
command "gfax" as user francesco
opens the fax window for an instant only, such as for a segmentaion
fault. Nothing on the console from which the command "gfax" was
issued.
francesco
-- Forwarded message ------
From: Fr
tes
a fatal error in the mono runtime or one of the native libraries
used by your application.
=
/usr/bin/gfax: line 37: 2801 Aborted mono /usr/lib/gfax/gfax.exe $@
deb32:/home/francesco#
Thanks for help
francesco pietra
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removed. I had to reinstall, and reconfigure, X.
francesco pietra
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Hi:
Upgraded i386 from lenny to squeeze. OK, except for (from several days) on
apt-get upgrade
errors with linux-image-2,6.301-686-2.6.30-6_i386.deb
Following with
apt-get -f install
probably is a remedy, but why any time?
am I alone with such an issue?
francesco pietra
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mainboard)
thanks
francesco pietra
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motherboard
has SATA connections (better two, so as to set up a RAID1).
Any suggestion on which motherboard (or motherboard type if you prefer
to be uncommittal about brand) would be greatly appreciated.
Thanks
francesco pietra
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25+1 NVIDIA binary kernel module common files
ii nvidia-kernel- 173.14.09-5NVIDIA binary kernel module source
un nvidia-kernel- (no description available)
un nvidia-setting (no description available)
Thanks for advice
francesco pietra
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apply the recipe.
Thanks
francesco pietra
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a clean unistalling?
Thanks
francesco pietra
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"ati"
BusID "PCI:3:1:0"
EndSection
=
03:01.0 VGA compatible controller: ATI Technologies Inc Rage XL (rev 27)
===
I tried
#dpkg-reconfigure xserver -xorg
setting:
kernel framebuffer device interface: yes
Keyboard layout: pc104
but id did not help.
Thanks for helping
francesco pietra
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error.
==
Is that an error in the configuration of the program?
Thanks for help
francesco pietra
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issue, i.e. by cross appending the
authorized_keys files, in order that each machine knows itself. But
there must be a simpler way.
Why that need? Certain parallelized computational codes only work if
the above 'fully' is met. I came once again across the issue in
reinstalling i386 follow
Posted again from the e-mail address I am registered to
-- Forwarded message --
From: Francesco Pietra
Date: Fri, Jan 2, 2009 at 8:26 PM
Subject: Failure to load amd64 overcome, though mem problems
To: amd64 Debian , debian-users
Hi:
Near the end of last year, in a period of
=
This mail started originally under the hypothesis that the problem was
some degradation of lenny. I understand now that this mail is largely
out of topic both on amd64 and users. Hope only that experienced users
may suggest from their experience.
Thanks and happy 2009!
francesco
On Wed, Oct 29, 2008 at 11:40 AM, Alex Samad <[EMAIL PROTECTED]> wrote:
> On Wed, Oct 29, 2008 at 08:24:55AM +0100, Francesco Pietra wrote:
>> On Wed, Oct 29, 2008 at 7:06 AM, Douglas A. Tutty <[EMAIL PROTECTED]> wrote:
>> > On Wed, Oct 29, 2008 at 05:44:31AM
me
initrd
initrd.img
initrd.img.old
lib
lib32
lib64
lost+found
media
mnt
opt
proc
root
sbin
opt
proc
root
sbin
selinux
srv
sys
tmp
usr
var
vmlinuz
vmlinuz.old
==
/dev/md4 2.8G 1.6G 1.1G 59% /var
On Wed, Oct 29, 2008 at 8:24 AM, Francesco Pietra <[EMAIL PROTECTED]> wrote:
&
On Wed, Oct 29, 2008 at 7:06 AM, Douglas A. Tutty <[EMAIL PROTECTED]> wrote:
> On Wed, Oct 29, 2008 at 05:44:31AM +0100, Francesco Pietra wrote:
>> Major mistake (shutting down the ups unit) while doing a parallel
>> computation on all 8 processors (UMA-type machine amd64 len
my home shows all directories and files for work (in my home
only data from computations, all applications installed in
/usr/local).
What could I do to set up the sytem in order before resuming the computation?
Thanks
francesco pietra
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chem
drawing package as there is now gchampaint. Hope to find a linux
alternative to the free-form database.
francesco
On Sun, Jun 8, 2008 at 8:03 PM, Florian Kulzer
<[EMAIL PROTECTED]> wrote:
> On Sun, Jun 08, 2008 at 19:31:06 +0200, Francesco Pietra wrote:
>> Frustrated by lack of f
kages:
mesa-utils pdksh
The following packages will be REMOVED:
alacarte* fast-user-switch-applet* gnome-applets* gnome-control-center*
gnome-core* gnome-desktop-environment* gnome-panel* gnome-session*
libgnome-window-settings1* libwine* libwine-alsa* libwine-cms* libwine-esd*
libwine-g
:CoResumeClassObjects stub
[EMAIL PROTECTED]:~$
____
francesco pietra
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depend from the wine version currently
on i386 or from the deb packaging? I have purged-removed all wine and
reinstalled; same problems.
Thanks
francesco pietra
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ue, 5/6/08, Lennart Sorensen <[EMAIL PROTECTED]> wrote:
> From: Lennart Sorensen <[EMAIL PROTECTED]>
> Subject: Re: libsc7_2.3.1-3_amd64.deb problems
> To: "Francesco Pietra" <[EMAIL PROTECTED]>
> Cc: "C. Ahlstrom" <[EMAIL PROTECTED]>, "d
> From: Lennart Sorensen <[EMAIL PROTECTED]>
> Subject: Re: libsc7_2.3.1-3_amd64.deb problems
> To: "Francesco Pietra" <[EMAIL PROTECTED]>
> Cc: "C. Ahlstrom" <[EMAIL PROTECTED]>, "debian64" <[EMAIL PROTECTED]>
> Date: Tuesd
ackage bsd-mailx is not configured yet.
dpkg: error processing mailx (--configure):
dependency problems - leaving unconfigured
Errors were encountered while processing:
exim4-daemon-light
at
exim4
bsd-mailx
mailx
E: Sub-process /usr/bin/dpkg returned an error code (1)
Thanks
francesco pietra
nd
others, without success.
Thanks francesco pietra
--- On Sat, 5/3/08, Francesco Pietra <[EMAIL PROTECTED]> wrote:
> From: Francesco Pietra <[EMAIL PROTECTED]>
> Subject: Errors on upgrading from etch to lenny
> To: "debian-users"
> Date: Saturday, May 3, 2008, 10:
grams
driven by wine, all OK).
Thanks
francesco pietra
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-
Sorry for the mistake, although otherwise clear from the context: 16GB total is
correct as there are 4GB per cpu.
francesco
--- Francesco Pietra <[EMAIL PROTECTED]> wrote:
> Date: Thu, 31 Jan 2008 07:39:43 -0800 (PST)
> From: Francesco Pietra <[EMAIL PROTECTED]>
> Subj
, where my .bashrc. deain linux
i386 etch on the desktop.
Thanks
francesco pietra
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dos2unix command correctly issued?
Thanks
francesco pietra
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on will be homogenous, with intels for fortran, C and C++ for
bothe amber and openmpi.
Cheers
francesco
--- Marko Randjelovic <[EMAIL PROTECTED]> wrote:
> Francesco Pietra wrote:
> > Probably I have found the way with
> >
> > apt-cache search (show) xorg-dev
> >
>
Probably I have found the way with
apt-cache search (show) xorg-dev
V 1:7.1.0-16
fp
--- Francesco Pietra <[EMAIL PROTECTED]> wrote:
> Date: Fri, 29 Jun 2007 23:00:52 -0700 (PDT)
> From: Francesco Pietra <[EMAIL PROTECTED]>
> Subject: Header files amd64 et
ll headers, though above etch, with a more recent kernel. In
other words, I don't know the appropriate console command to trace the package
to install. And, for the moment I refrain from dist upgrade.
Thanks
f
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