Bug#1103430: ITP: jmh -- harness for building, running, and analysing Java benchmarks

Package: wnpp Severity: wishlist Owner: Debian-Java team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-j...@lists.debian.org -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 * Package name: jmh Version : 1.37 Upstream Contact: OpenJDK Community * URL : https://op

Bug#1079341: ITP: itkadaptivedenoising -- Insight Toolkit module for image denoising

Package: wnpp Severity: wishlist Owner: Pierre Gruet X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: itkadaptivedenoising Version : 0.0+git20240619.005bd0e Upstream Contact: Nick Tustison * URL : https://github.com/ntustison

Bug#1079340: ITP: itkgenericlabelinterpolator -- Insight Toolkit module to interpolate label images

Package: wnpp Severity: wishlist Owner: Pierre Gruet X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: itkgenericlabelinterpolator Version : 1.2.1 Upstream Contact: https://github.com/InsightSoftwareConsortium/ITKGenericLabelInterpolator

Bug#1069970: ITP: libeddsa-java -- implementation of EdDSA in Java

Package: wnpp Severity: wishlist Owner: Debian-Java team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-j...@lists.debian.org * Package name: libeddsa-java Version : 0.3.0 Upstream Contact: str4d * URL : https://github.com/str4d/ed25519-java * License : CC

Bug#1050556: ITP: libfailsafe-java -- fault tolerance and resilience patterns Java library

Package: wnpp Severity: wishlist Owner: Debian Java Maintainers X-Debbugs-Cc: debian-devel@lists.debian.org * Package name: libfailsafe-java Version : 3.3.2 Upstream Contact: Jonathan Halterman * URL : Jonathan Halterman * License : Apache-2.0 Programming L

Bug#1050170: ITP: libconcurrentunit-java -- simple toolkit for testing multi-threaded Java code

Package: wnpp Severity: wishlist Owner: Debian Java Maintainers X-Debbugs-Cc: debian-devel@lists.debian.org * Package name: libconcurrentunit-java Version : 0.4.6 Upstream Contact: Jonathan Halterman * URL : https://github.com/jhalterman/concurrentunit * License

Bug#1027277: ITP: glgrib -- geophysical GRIB2-encoded fields displayer using OpenGL

Package: wnpp Severity: wishlist Owner: Pierre Gruet User: debian-scie...@lists.debian.org Usertags: field..geography X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org * Package name: glgrib Version : 1.0.0 Upstream Contact: Philippe Marguinaud * URL

Bug#1022258: ITP: libmjson-java -- lean JSON Library for Java with a compact API

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: libmjson-java Version : 1.4.0 Upstream Author : Miami-Dade County * URL : https://bolerio.github.io/mjson/ * License

Bug#1021934: ITP: biojava6-live -- Java API to biological data and applications (version 6)

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: biojava6-live Version : 6.0.5 Upstream Author : BioJava Developers * URL : https://biojava.org * License : LGPL-2.1

Bug#1016046: ITP: genomicsdb -- sparse array storage library for genomics

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: genomicsdb Version : 1.4.3 Upstream Author : Intel Health and Lifesciences * URL : https://www.genomicsdb.org/ * License

Bug#1015926: ITP: persalys -- GUI for uncertainty treatment and variabilities management

Package: wnpp Severity: wishlist Owner: Pierre Gruet User: debian-scie...@lists.debian.org Usertags: field..science X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org * Package name: persalys Version : 12.0.1 Upstream Author : Airbus-EDF-Phimeca * URL

Bug#1014504: ITP: ojalgo -- Java library to do mathematics, linear algebra and optimisation

Package: wnpp Severity: wishlist Owner: Debian-math team X-Debbugs-Cc: debian-devel@lists.debian.org * Package name: ojalgo Version : 51.3.0 Upstream Author : Optimatika * URL : https://www.ojalgo.org/ * License : Expat Programming Lang: Java Description

Bug#1014344: ITP: gatk-bwamem -- interface to call Heng Li's bwa mem aligner from Java code

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: gatk-bwamem Version : 1.0.4 Upstream Author : Broad Institute * URL : https://github.com/broadinstitute/gatk-bwamem-jni/ * L

Bug#1011557: ITP: pagmo -- library for massively parallel optimisation

Package: wnpp Severity: wishlist Owner: Pierre Gruet User: debian-scie...@lists.debian.org Usertags: field..science X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org * Package name: pagmo Version : 2.18.0 Upstream Author : Francesco Biscani * URL

Bug#1011068: ITP: spectra -- library for large scale eigenvalue problems

Package: wnpp Severity: wishlist Owner: Pierre Gruet X-Debbugs-Cc: debian-devel@lists.debian.org, team+m...@tracker.debian.org * Package name: spectra Version : 1.0.1 Upstream Author : Yixuan Qiu * URL : https://spectralib.org/ * License : MPL-2.0

Bug#1008572: ITP: xgboost-predictor-java -- Java implementation of XGBoost predictor for online prediction tasks

Package: wnpp Severity: wishlist Owner: Pierre Gruet User: debian-scie...@lists.debian.org Usertags: field..science X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org * Package name: xgboost-predictor-java Version : 0.3.1 Upstream Author : KOMIYA Atsushi

Re: Bug#1008304: ITP: http-nio -- http/s file system provider for Java NIO.2

Hi Guillem, Le 28/03/2022 à 13:43, Guillem Jover a écrit : Hi! On Sat, 2022-03-26 at 14:59:17 +0100, Pierre Gruet wrote: Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: http-nio Version

Bug#1008304: ITP: http-nio -- http/s file system provider for Java NIO.2

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: http-nio Version : 0.1.0 Upstream Author : Daniel Gomez-Sanchez * URL : https://github.com/lbergelson/http-nio * License

Bug#1008128: ITP: gatk-fermilite -- interface to call Heng Li's fermi-lite assembler from Java code

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: gatk-fermilite Version : 1.2.1 Upstream Author : Broad Institute * URL : https://github.com/broadinstitute/gatk-fermilite-jn

Bug#1006834: ITP: aeonbits-owner -- API to handle application configuration through Java properties file

Package: wnpp Severity: wishlist Owner: Debian med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: aeonbits-owner Version : 1.0.12 Upstream Author : Luigi R. Viggiano * URL : http://owner.aeonbits.org/ * License : B

Bug#1006501: ITP: snpsift -- tool to annotate and manipulate genome variants

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: snpsift Version : 5.1 Upstream Author : Pablo Cingolani * URL : https://pcingola.github.io/SnpEff/ss_introduction/ * Licens

Bug#1005356: ITP: rockhopper -- system for analyzing bacterial RNA-seq data

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: rockhopper Version : 2.0.3 Upstream Author : Brian Tjaden * URL : https://cs.wellesley.edu/~btjaden/Rockhopper * License

Bug#1004554: ITP: libpdfbox-graphics2d-java -- Java library to embed graphics as vector drawing in a PDF

Package: wnpp Severity: wishlist Owner: Debian Java team X-Debbugs-Cc: debian-devel@lists.debian.org, pkg-java-maintain...@lists.alioth.debian.org * Package name: libpdfbox-graphics2d-java Version : 0.34 Upstream Author : Emmeran Seehuber * URL : https://github.com/ro

Bug#1004152: ITP: malt -- sequence alignment and analysis tool to process sequencing data

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: malt Version : 0.5.2 Upstream Author : Daniel Huson * URL : https://github.com/danielhuson/malt * License : GPL-3+

Bug#1003782: ITP: megan-ce -- interactive tool to explore and analyse microbiome sequencing data

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: megan-ce Version : 6.21.1 Upstream Author : Daniel Huson * URL : https://github.com/danielhuson/megan-ce * License

Bug#1001099: ITP: stopt -- library for stochastic optimization problems

Package: wnpp Severity: wishlist Owner: Pierre Gruet X-Debbugs-Cc: debian-devel@lists.debian.org * Package name: stopt Version : 4.2 Upstream Author : Xavier Warin * URL : https://gitlab.com/stochastic-control/StOpt/ * License : LGPL-3 Programming Lang: C

Bug#999424: ITP: geners -- generic serialization library for C++

Package: wnpp Severity: wishlist Owner: Pierre Gruet X-Debbugs-Cc: debian-devel@lists.debian.org * Package name: geners Version : 1.12.0 Upstream Author : Igor Volobouev * URL : https://geners.hepforge.org/ * License : Expat Programming Lang: C

Bug#996993: ITP: biojava5-live -- Java API to biological data and applications (version 5)

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: biojava5-live Version : 5.4.0 Upstream Author : BioJava Developers * URL : https://www.biojava.org/ * License : LGP

Bug#996991: ITP: jgrapht -- Java library of graph theory data structures and algorithms

Package: wnpp Severity: wishlist Owner: Pierre Gruet User: debian-scie...@lists.debian.org Usertags: field..science X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org * Package name: jgrapht Version : 1.5.1 Upstream Author : Abdallah Atouani and

Bug#996865: ITP: jheaps -- Java library with various heap implementations

Package: wnpp Severity: wishlist Owner: Debian-java team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-j...@lists.debian.org * Package name: jheaps Version : 0.14 Upstream Author : Dimitrios Michail * URL : https://github.com/d-michail/jheaps * License :

Bug#996727: ITP: ciftools-java -- Java library to read and write CIF files

Package: wnpp Severity: wishlist Owner: Debian java team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-j...@lists.debian.org * Package name: ciftools-java Version : 3.0.0 Upstream Author : Sebastian Bittrich * URL : https://github.com/rcsb/ciftools-java * License

Bug#995294: ITP: tipp -- taxonomic identification and abundance profiling tool

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: tipp Version : 1.0 Upstream Author : Siavash Mirarab * URL : https://github.com/TeraTrees/TIPP * License : GPL-3 P

Bug#992044: ITP: libgoby-java -- next-generation sequencing data and results analysis tool

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: libgoby-java Version : 3.3.1 Upstream Author : Institute for Computational Biomedicine * URL : https://github.com/CampagneLa

Bug#988879: ITP: grengine -- engine for running and embedding Groovy in a Java virtual machine

Package: wnpp Severity: wishlist Owner: Debian-java team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-j...@lists.debian.org * Package name: grengine Version : 3.0.0 Upstream Author : Alain Stalder * URL : https://www.artecat.ch/grengine * License : Apach

Bug#988531: ITP: libpf4j-update-java -- update mechanism for Java modular applications

Package: wnpp Severity: wishlist Owner: Debian-java team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-j...@lists.debian.org * Package name: libpf4j-update-java Version : 2.3.0 Upstream Author : Decebal Suiu * URL : https://pf4j.org * License : Apache-2.0

Bug#988279: ITP: libpf4j-java -- framework to turn monolithic Java applications into modular ones

Package: wnpp Severity: wishlist Owner: Debian-java team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-j...@lists.debian.org * Package name: libpf4j-java Version : 3.6.0 Upstream Author : Decebal Suiu * URL : https://pf4j.org/ * License : Apache-2.0 Pro

Bug#987946: ITP: capsule-maven-nextflow -- packaging tool for Java applications with Maven coordinates

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: capsule-maven-nextflow Version : 1.0.3.1 Upstream Author : Paolo di Tommaso * URL : https://github.com/nextflow-io/capsule-

Bug#987771: ITP: capsule-nextflow -- packaging and deployment tool for Java applications

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: capsule-nextflow Version : 1.1.0 Upstream Author : Paolo di Tommaso * URL : https://github.com/nextflow-io/capsule * Licens

Bug#986141: ITP: snpeff -- genetic variant annotation and effect prediction toolbox

Package: wnpp Severity: wishlist Owner: Debian-med team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: snpeff Version : 4.3t Upstream Author : Pablo Cingolani * URL : https://pcingola.github.io/SnpEff/ * License : LGPL

Bug#974879: ITP: intervalstorej -- Java implementation of the Nested Containment List data structure

Package: wnpp Severity: wishlist Owner: Debian Java team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-j...@lists.debian.org * Package name: intervalstorej Version : 1.2 Upstream Author : Mungo Carstairs, Barton Group * URL : https://github.com/bartongroup/Interv

Bug#973568: ITP: libpj-java -- API and middleware for parallel programming in Java

Package: wnpp Severity: wishlist Owner: Debian-med project X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: libpj-java Version : 20150107 Upstream Author : Alan Kaminsky * URL : https://www.cs.rit.edu/~ark/pj.shtml * License

Bug#972554: ITP: icb-utils -- Java library of utilities to manage files and compute statistics

Package: wnpp Severity: wishlist Owner: Debian-med project X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: icb-utils Version : 2.0.1+git20161002.afee1d9 Upstream Author : Fabien Campagne * URL : https://github.com/CampagneLabora

Bug#971870: ITP: sepp -- methods using ensembles of Hidden Markov Models (HMM)

Package: wnpp Severity: wishlist Owner: Debian-med project X-Debbugs-Cc: debian-devel@lists.debian.org, debian-...@lists.debian.org * Package name: sepp Version : 4.3.10 Upstream Author : Siavash Mirarab * URL : https://github.com/smirarab/sepp/ * License : GP

Bug#969186: ITP: libreflections-java -- Java runtime metadata analysis library

Package: wnpp Severity: wishlist Owner: Debian Java team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-j...@lists.debian.org * Package name: libreflections-java Version : 0.9.12 Upstream Author : ronmamo * URL : https://github.com/ronmamo/reflections * License

Bug#969176: ITP: libdsiutils-java -- Java library of statistical and text data handling tools

Package: wnpp Severity: wishlist Owner: Debian Java team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-j...@lists.debian.org * Package name: libdsiutils-java Version : 2.6.6 Upstream Author : Sebastiano Vigna * URL : http://dsiutils.di.unimi.it * License

Bug#966299: ITP: libapfloat-java -- high performance arbitrary precision arithmetic library for Java

Package: wnpp Severity: wishlist Owner: Debian Java team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-j...@lists.debian.org * Package name: libapfloat-java Version : 1.9.1 Upstream Author : Mikko Tommila * URL : http://www.apfloat.org/apfloat_java * License

Bug#966192: ITP: libcharts4j-java -- free, lightweight charts and graphs Java API

Package: wnpp Severity: wishlist Owner: Debian Java team X-Debbugs-Cc: debian-devel@lists.debian.org, debian-j...@lists.debian.org * Package name: libcharts4j-java Version : 1.3 Upstream Author : Julien Chastang * URL : https://github.com/julienchastang/charts4j * Lice

Bug#963630: ITP: libaparapi-java -- framework for executing native Java code on the GPU

Package: wnpp Severity: wishlist Owner: Debian-med project * Package name: libaparapi-java Version : 2.0.0 Upstream Author : Gary Frost, Syncleus, Inc. * URL : http://aparapi.com/ * License : Apache-2.0 Programming Lang: Java Description : framework for

Re: Bug#961158: ITP: distlib -- Java library of statistical distribution functions

Control: retitle -1 ITP: libdistlib-java -- Java library of statistical distribution functions Hi Scott and Andreas, Le 21/05/2020 à 06:44, Scott Kitterman a écrit : > On Thursday, May 21, 2020 12:08:44 AM EDT Andreas Tille wrote: >> At least the name of the binary package should be >> >> l

Bug#961158: ITP: distlib -- Java library of statistical distribution functions

Package: wnpp Severity: wishlist Owner: Debian-med project * Package name: distlib Version : 0.9.1 Upstream Author : Peter N. Steinmetz * URL : https://sourceforge.net/projects/statdistlib * License : GPL-2 Programming Lang: Java Description : Java libr