Bug#855900: ITP: paleomix -- pipelines and tools for the processing of ancient and modern HTS data

2017-02-22 Thread Andreas Tille
Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: paleomix Version : 1.2.7 Upstream Author : Mikkel Schubert * URL : https://github.com/MikkelSchubert/paleomix * License : MIT Programming Lang: Python Description : pipelines and tool

Re: mining system information of bugs

2017-02-22 Thread gustavo panizzo
On Wed, Feb 22, 2017 at 07:16:10PM +0100, Adam Borowski wrote: > Hi, cat staff and useless humies! > > I've done some data mining on bug reports that include a "System > Information" section that reportbug adds. > ... > Anything else you'd want me to get? Core counts for >1? UTC hours or days

[solved] Re: apt-get upgrade removing ifupdown on jessie→stretch upgrade

2017-02-22 Thread martin f krafft
also sprach martin f krafft [2017-02-23 11:22 +1300]: > I'm now taking this to a bug report: > > http://bugs.debian.org/855891 Read the gory details there, the gist is that David spotted my used of APT::Get::AutomaticRemove "true"; in the apt.conf.d files. The rest is in the bug report, I

Re: mining system information of bugs

2017-02-22 Thread Paul Wise
On Thu, Feb 23, 2017 at 2:16 AM, Adam Borowski wrote: > Anything else you'd want me to get? Core counts for >1? UTC hours or days > of week when bugs are filed? Kernels that've been in the archive vs those > that haven't? I'd be interested in stats of Debian releases, preferred suites, apt pol

Re: convention on listen port local or all network interfaces etc.

2017-02-22 Thread Patrick Schleizer
Tomas Pospisek: > Am 21.02.2017 um 01:55 schrieb Patrick Schleizer: > >> for file_name in /usr/lib/server-config.d/*.conf ; do >>file_list="$file_list $file_name" >> done >> >> for file_name in /etc/server-config.d/*.conf ; do >>file_list="$file_list $file_name" >> done >> >> for file_name

Re: convention on listen port local or all network interfaces etc.

2017-02-22 Thread Patrick Schleizer
Marco d'Itri: >> So far we at Whonix had discussions with ricochet-im, onionshare, >> ZeroNet and unMessage. They are all interested to make their >> applications compatible with Whonix. However, asking each individual >> project to `/etc/application-specific.d` folder where Whonix then could >> dr

Re: apt-get upgrade removing ifupdown on jessie→stretch upgrade

2017-02-22 Thread martin f krafft
also sprach Jonas Smedegaard [2017-02-23 12:06 +1300]: > Maybe your ifupdown was flagged as auto-installed, a recent prior APT > process upgraded to netbase 5.4 (no longer recommending ifupdown), and > your latest APT process just finished an auto-removal of the no longer > needed ifupdown for

Re: Bug#855727: ITP: hikaricp-java -- High performance JDBC connection pool library

2017-02-22 Thread Emmanuel Bourg
Hi Apollon, If you plan to package this library, do you think you could bring it under the Java Team umbrella please? Thank you, Emmanuel Bourg

Re: apt-get upgrade removing ifupdown on jessie→stretch upgrade

2017-02-22 Thread Jonas Smedegaard
Quoting martin f krafft (2017-02-22 01:06:24) > Hey, > > I just upgraded a system that had ifupdown from backports.org on it. > Following cleanup and dpkg --audit etc., I ran > > root@cymbaline:/etc/apt/sources.list.d# apt-get upgrade > Reading package lists... Done > Building dependency tr

Re: apt-get upgrade removing ifupdown on jessie→stretch upgrade

2017-02-22 Thread Eric Cooper
On Thu, Feb 23, 2017 at 11:22:17AM +1300, martin f krafft wrote: > [...] I've been using APT since one of its first > versions, and I think "upgrade" has existed from the early days with > precisely the promise that, unlike "dist-upgrade", it would not > modify the set of installed packages, either

Re: apt-get upgrade removing ifupdown on jessie→stretch upgrade

2017-02-22 Thread martin f krafft
Dear David, Thank you for your witty response, and your work on APT. I mean it. I am quite sure you get a lot of diverging requests and then one like mine, without version numbers, logs, but CAPITAL LETTERS instead. While your points are spot-on, and I especially liked "this is a proposal, not a

Re: apt-get upgrade removing ifupdown on jessie→stretch upgrade

2017-02-22 Thread David Kalnischkies
On Wed, Feb 22, 2017 at 09:04:16PM +0100, Luca Capello wrote: > On Wed, 22 Feb 2017 13:16:27 +0100, David Kalnischkies wrote: > > On Wed, Feb 22, 2017 at 01:06:24PM +1300, martin f krafft wrote: > > > What am I not understanding right here? Shouldn't "apt-get upgrade" > > > NEVER EVER EVER EVER rem

Re: apt-get upgrade removing ifupdown on jessie→stretch upgrade

2017-02-22 Thread Luca Capello
Hi there, On Wed, 22 Feb 2017 13:16:27 +0100, David Kalnischkies wrote: > On Wed, Feb 22, 2017 at 01:06:24PM +1300, martin f krafft wrote: > > What am I not understanding right here? Shouldn't "apt-get upgrade" > > NEVER EVER EVER EVER remove something? [...] > Fun fact: We have a few reports whic

Re: mining system information of bugs

2017-02-22 Thread Ben Hutchings
On Wed, 2017-02-22 at 19:16 +0100, Adam Borowski wrote: [...] > +===+ > > ꜰᴏʀᴇɪɢɴ ᴀʀᴄʜꜱ | > > +===+ > Lots of noise, thus only tidbits.  2016+: > > 57% of amd64 have i386. > > Only 148 of i386 have amd64, despite 229 (per above) running an amd64 > kernel.  Shouldn't they

mining system information of bugs

2017-02-22 Thread Adam Borowski
Hi, cat staff and useless humies! I've done some data mining on bug reports that include a "System Information" section that reportbug adds. This information is notoriously corrupted and/or includes write-in stuff. I tried to do my best to recover data when it could be done unambigously; many co

Re: De-Branding of Icedove, reintroducing Thunderbird packages into Debian

2017-02-22 Thread Thibaut Paumard
Le 19/02/2017 à 08:37, Carsten Schoenert a écrit : > Hello, > > Am 19.02.2017 um 07:12 schrieb Josh Triplett: >> Mike Hommey wrote: >>> Why not just create a ~/.thunderbird symlink to ~/.icedove if >>> ~/.icedove exists? >> >> This seems like the right solution. (Or, equivalently, rename >> ~/.ic

Re: apt-get upgrade removing ifupdown on jessie→stretch upgrade

2017-02-22 Thread David Kalnischkies
On Wed, Feb 22, 2017 at 01:06:24PM +1300, martin f krafft wrote: > root@cymbaline:/etc/apt/sources.list.d# apt-get upgrade […] > The following packages will be REMOVED: > ifupdown libasprintf0c2 libperl4-corelibs-perl libuuid-perl python-bson > python-pymongo > > and indeed, it then went o

Re: Help requested: Packages which FTBFS randomly

2017-02-22 Thread Simon McVittie
On Tue, 21 Feb 2017 at 23:35:44 +, Ben Hutchings wrote: > Having said that, some ioctls that make sense for block-backed > filesystems, such as FS_IOC_FIEMAP, won't work on a tmpfs (or nfs, > ubifs, etc.). One notable omission is that tmpfs doesn't do generic "user." extended attributes (due t