On 08/16/2015 11:28 AM, Chris West (Faux) wrote:
> Source: biojava4-live
> Version: 4.1.0+dfsg-1
> Severity: serious
> Justification: fails to build from source
> Tags: sid stretch
> User: reproducible-bui...@lists.alioth.debian.org
> Usertags: ftbfs
> X-Debbugs-CC: reproducible-bui...@lists.alio
On 08/17/2015 01:57 PM, Chris Lamb wrote:
> Source: biojava4-live
> Version: 4.1.0+dfsg-1
> Severity: serious
> Justification: fails to build from source
> User: reproducible-bui...@lists.alioth.debian.org
> Usertags: ftbfs
> X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
>
> Dear Main
Upstream is responsible of modifying the load.conf file. I gonna try to
remove it from package to see if file is necessary or what should be
done to avoid this.
Regarding password in conf file:
- this file is needed by library to access the database (read and
write). I gonna change read access to
Password set in "clear" in postinst is only a template with default
values set at first-time install.
User/Admin must update values to a correct db user to access the database.
This is needed because application setup needs a password information.
Password echoed at this step is not a security fl
Hi,
the bug is related to a Prolog issue , fixed in a forthcoming release
(related to bug 680116, fixed in experimental).
Do you agree to lower the severity of the bug (only impacting build on a
few architectures due to compiler issue on those archs) ?
I think we could move it to important.
Oli
This should have been fixed in 1.4-1 with classpath related to
sa-jdi.jar in debian/patches/fix_classpath_in_build_xml.patch
This jar has been added to build path.
Build has been tested with pbuilder from sid.
This could be related to JAVA_HOME not being set in environment
Olivier
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On 12/14/2014 03:19 PM, Emilien Klein wrote:
> TLDR: Please check if the "/var/lib/tomcat8/shared" folder is still used
> with Tomcat 8.
>
>
> I have applied the previously attached patch, the package builds fine,
> but when installing the .deb the following error occurs:
>
> Setting up biomaj-wat
On 08/31/2015 09:27 AM, Andreas Tille wrote:
> Hi,
>
> I commited a fix for the library transition to SVN. (Besides this
> I also tried to fix some lintian issues but failed with the
> wrong-whatis-entry-in-manpage one.)
>
> Olivier, could you please check and either upload or ping me for
> team
Le 7/2/12 10:01 PM, Aaron M. Ucko a écrit :
> Source: logol
> Version: 1.5.0-2
> Severity: serious
> Justification: fails to build from source
>
> For some reason, logol's test suite has been failing on ia64 and
> sparc. The ia64 log
> (https://buildd.debian.org/status/fetch.php?pkg=logol&arch=i
After investigation on ia64, repdocuding the error on anyspacer.logol
test, there is a segmentation fault in prolog executable.
It occurs in the middle of the treatment.
WIth logs we see the seg fault occuring at:
write(LogolVAR_Before_2),nl,sleep(1),*SEGFAULT HERE*
isexact_pos(LogolVAR_Before_2['
Le 9/6/12 9:53 PM, Andreas Tille a écrit :
> Hi Sebastian,
>
> On Mon, Aug 27, 2012 at 08:20:14PM +0200, Sebastian Hilbert wrote:
>>> after reading the bug report twice I noticed that the problem is
>>> actually not comparable to the issue discussed currently on
>>> debian-devel@l.d.o, because the
I see a test failing in t/Ontology/IO/obo.t line 47 at is
(scalar(@terms), 5), used to work in a previous perl release:
Code of test:
my $parser = Bio::OntologyIO->new(
-format=> "obo",
^I^I -file => test_input_file('so.obo'));
my $ont = $parser->next_ontology
Running several times *perl t/Ontology/IO/obo.t* leads to different results
We sometimes have 1 or 6 or 7 failing tests
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It appears that: (in obo ontology test)
my @terms = $ont->get_child_terms($roots[0]);
@terms array order is not always the same.
As following tests take first element of array, it explains why
sometimes it succeed, sometimes it fails
Now I don't know why order is different
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On 08/26/2013 08:54 PM, gregor herrmann wrote:
> On Mon, 26 Aug 2013 12:56:16 +0200, olivier.sal...@codeless.fr wrote:
>
>> As following tests take first element of array, it explains why
>> sometimes it succeed, sometimes it
On 11/10/2013 03:03 AM, Andreas Beckmann wrote:
> I can reproduce this problem in pbuilder using the sid tarball as created by
> piuparts and the following commands:
>
> sudo pbuilder login --basetgz /srv/piuparts/slave/basetgz/sid_amd64.tar.gz
>
> export DEBIAN_FRONTEND=noninteractive
> sed -i /
Hi,
could you specify what you mean by hard-coded dependencies ?
Those are specified in control file. Do you mean they should be set in
shlibs.local file ?
Thanks
Olivier
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Those sources files are not really "source files" , they are
added/generated by GWT, used to build the war file.
Those files are not used to build the package, and are
regenerated/copied by the build process from GWT.
As biomaj-watcher is in contrib, this should not be an issue.
I will, however,
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