Bug#978032: python-cobra: autopkgtest regression in testing

2021-01-25 Thread Andreas Tille
On Mon, Jan 25, 2021 at 04:51:18PM +0200, Adrian Bunk wrote: > this bug report is from 24 Dec, so the breakage was not caused by the > libsbml 5.19 upgrade. > > python-cobra seems to have been broken by Python 3.8 -> 3.9 Yes, but it seems cobra 0.20 is broken by libsbml 5.19 which is no real los

Bug#978032: python-cobra: autopkgtest regression in testing

2021-01-25 Thread Adrian Bunk
On Mon, Jan 25, 2021 at 03:04:03PM +0100, Andreas Tille wrote: > Hi Adrian, Hi Andreas, >... > I'm not sure whether this is related to libsbml 5.19 upgrade (I admit I > failed to > realise that upgrading libsbml might mean a transition since I lived under the > impression that libsbml has no rde

Bug#978032: python-cobra: autopkgtest regression in testing

2021-01-25 Thread Andreas Tille
Hi Adrian, On Mon, Jan 25, 2021 at 12:07:27AM +0200, Adrian Bunk wrote: > > __ ERROR at setup of TestManipulation.test_escape_ids > > __ > > > > filename = '/usr/lib/python3/dist-packages/cobra/test/data/textbook.xml.gz' > > number = > > f_replace = {'F_GENE': , > > 'F_G

Bug#978032: python-cobra: autopkgtest regression in testing

2021-01-24 Thread Adrian Bunk
On Thu, Dec 24, 2020 at 09:58:57PM +0200, Graham Inggs wrote: > Source: python-cobra > Version: 0.19.0-1 > Severity: serious > Tags: sid bullseye > X-Debbugs-CC: debian...@lists.debian.org > User: debian...@lists.debian.org > Usertags: regression > > Hi Maintainer > > The autopkgtests of python-c

Bug#978032: python-cobra: autopkgtest regression in testing

2020-12-24 Thread Graham Inggs
Source: python-cobra Version: 0.19.0-1 Severity: serious Tags: sid bullseye X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: regression Hi Maintainer The autopkgtests of python-cobra recently started to fail in testing [1]. I've copied what I hope is the relevan