Bug#866646: Any idea how to fix freebayes? [Was: Bug#866646: freebayes FTBFS with libhts-dev 1.4.1-2]

2017-09-04 Thread Fabian Klötzl
Hi Andreas, On 02.09.2017 14:54, Andreas Tille wrote: > The htslib issue remains the same but I have no idea how to fix it. The problem is that Allele.h defines a friend function called `json` residing in global namespace. However, hts.h already defined a value of an enum with the same name, thus

Bug#866646: Any idea how to fix freebayes? [Was: Bug#866646: freebayes FTBFS with libhts-dev 1.4.1-2]

2017-09-02 Thread Andreas Tille
a how to fix it. Kind regards Andreas. - Forwarded message from Adrian Bunk - Date: Fri, 30 Jun 2017 19:09:10 +0300 From: Adrian Bunk To: Debian Bug Tracking System Subject: Bug#866646: freebayes FTBFS with libhts-dev 1.4.1-2 X-Debian-PR-Message: report 866646 X-Debian-PR-Pa

Bug#866646: freebayes FTBFS with libhts-dev 1.4.1-2

2017-06-30 Thread Adrian Bunk
Source: freebayes Version: 1.0.2-1 Severity: serious https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/freebayes.html ... g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I/usr/include/bamtools -I../ttmath -I/usr/include/vcflib -I/usr/include/intervaltree `pkg-config --cflags libsmithwaterma