Processed: Re: Bug#1088316: [Debian-med-packaging] Bug#1088316: Bug#1088316: augur: autopkgtest failure with Python 3.13

2024-11-28 Thread Debian Bug Tracking System
Processing control commands: > reassign -1 python3-pyfastx 2.1.0-2 Bug #1088316 [src:augur] augur: autopkgtest failure with Python 3.13 Bug reassigned from package 'src:augur' to 'python3-pyfastx'. No longer marked as found in versions augur/24.4.0-1. Ignoring request to alter fixed versions of bu

Bug#1088316: [Debian-med-packaging] Bug#1088316: Bug#1088316: augur: autopkgtest failure with Python 3.13

2024-11-28 Thread Étienne Mollier
Control: reassign -1 python3-pyfastx 2.1.0-2 Control: affects -1 augur Control: retitle -1 python3-pyfastx: missing rebuild after improper python3 dependency declaration cause augur to ftbfs Control: fixed -1 2.1.0-3 Rebuilding with the newly introduced pyfastx build, which now should be properly

Bug#1088316: [Debian-med-packaging] Bug#1088316: Bug#1088316: augur: autopkgtest failure with Python 3.13

2024-11-27 Thread Étienne Mollier
Hi Graham, Graham Inggs, on 2024-11-26: > Please check why python3-pyfastx does not gain the expected versioned > dependencies on python3 when rebuilt with Python 3.13 as a supported > version. If that can be fixed by an upload, then a binNMU will not be > needed for this transition, but will be

Bug#1088316: augur: autopkgtest failure with Python 3.13

2024-11-27 Thread Graham Inggs
Control: tags -1 + ftbfs augur currently FTBFS in unstable on reproducible builds [1]. I've filed a bug against pyfastx [2] to track this. [1] https://tests.reproducible-builds.org/debian/rb-pkg/augur.html [2] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1088355

Bug#1088316: [Debian-med-packaging] Bug#1088316: augur: autopkgtest failure with Python 3.13

2024-11-26 Thread Graham Inggs
Hi Étienne On Tue, 26 Nov 2024 at 21:20, Étienne Mollier wrote: > Thanks for looking into the Python 3.13 transition. This > particular issue feel like pyfastx hasn't been rebuilt for > Python 3.13: Indeed, pyfastx appears neither in red nor green on the transition tracker [1], so it was not sc

Bug#1088316: [Debian-med-packaging] Bug#1088316: augur: autopkgtest failure with Python 3.13

2024-11-26 Thread Étienne Mollier
Hi Graham, Thanks for looking into the Python 3.13 transition. This particular issue feel like pyfastx hasn't been rebuilt for Python 3.13: > 137s from .metadata import read_metadata # noqa: F401 > 137s augur/io/metadata.py:5: in > 137s import pyfastx > 137s E ModuleNotFoundError: No module nam

Bug#1088316: augur: autopkgtest failure with Python 3.13

2024-11-26 Thread Graham Inggs
Source: augur Version: 24.4.0-1 Severity: serious User: debian-pyt...@lists.debian.org Usertags: python3.13 Hi Maintainer The autopkgtests of this package fail with Python 3.13 [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://ci.debian.net/package