Hi,
I've put the test suite line below (and others) into some autopkgtest
and for the moment forced the build time test to pass[1] to get some
package to test. I've built this and installed salmon as well as
salmon-dbgsym and was running the same test as Dominik via:
cp -a /usr/share/doc/salmon/
Hi Dominik,
thanks for your attempt to track this down. I'm wondering what might
happen if I refresh the pufferfish code in debian/external which I tried
in my last commit. Unfortunately this failed as well:
https://salsa.debian.org/med-team/salmon/-/jobs/3876351
Kind regards
Andreas.
A
A stacktrace from the segmentation fault looks like follows.
It triggers consistently for me with the following steps in a source-tree
fakeroot debian/rules binary
cd sample_data/
/tmp/salmon-1.9.0+ds1/obj-x86_64-linux-gnu/src/salmon index -t
transcripts.fasta -i sample_salmon_quasi_index
#0 0
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