Bug#848758: [Debian-med-packaging] Bug#848758: python-skbio: FTBFS: Test failures

2016-12-23 Thread Kevin Murray
thon{version} -p 3.5 returned > > exit code 13 > > debian/rules:22: recipe for target 'override_dh_auto_test' failed Upstream has now fixed this issue, and I've cherry-picked the fix into the package as a patch. I've pushed to git.d.o, so an (urgent) upload would be much appreciated. Merry Christmas all! Cheers K --- Kevin Murray

Bug#845737: New release

2016-12-02 Thread Kevin Murray
hores when building this package in pbuider chroots, related to a missing /dev/shm. I have never experienced the issues you report though. Cheers, K [1]: https://bitbucket.org/snakemake/snakemake/issues/426/random-test-hangs-during-debian-package --- Kevin Murray

Bug#841560: [Debian-med-packaging] Bug#841560: Could anybody please check the issue in python-skbio

2016-11-18 Thread Kevin Murray
Hi all, AFAICT I think I should have fixed the issues in skbio. I've filed an ROM bug, and updated to latest upstream. Could I please get an upload and see if the test failure goes away? Cheers, Kevin --- Kevin Murray

Bug#841560: [Debian-med-packaging] Bug#841560: Bug#841560: Could anybody please check the issue in python-skbio

2016-11-15 Thread Kevin Murray
Hi Andreas, On 19:15 15/11, Kevin Murray wrote: > I will also (but haven't yet) see if I can get it to build against libssw. Well that turned out to be far easier than I expected. I've pushed a patch that uses libssw from debian. So let's see if this fixes the build. And we a

Bug#841560: [Debian-med-packaging] Bug#841560: Could anybody please check the issue in python-skbio

2016-11-15 Thread Kevin Murray
re also old binary packages preventing a testing transition, which I'm not sure how to deal with. Cheers, K --- Kevin Murray

Bug#808424: [Debian-med-packaging] Bug#808424: [Bug#808424: khmer: FTBFS: assumes a real home directory]

2015-12-21 Thread Kevin Murray
now, thought it's not ready for upload. Cheers, Kevin --- Kevin Murray 0xA4B4EE6A

Bug#801900: axe-demultiplexer: /usr/bin/axe already used by the axe package

2015-10-27 Thread Kevin Murray
I thought I responded to this already. I'm fixing this upstream so that the binary name doesn't change; it will now be `axe-demux` everywhere. I've re-released. I've decided to re-do the entire packaging too, so that we don't bundle libqes or a cut-down gsl. I have a coupl

Bug#803009: dwgsim: Binary is not included in package

2015-10-25 Thread Kevin Murray
Package: dwgsim Version: 0.1.11-1 Severity: grave Justification: renders package unusable Hi all, I somehow managed not to add the debian/dwgsim.install file to git. Due to the upstream makefile not having an install rule, this lead to a Debian package with no binary. I have fixed this in git. M

Bug#791873: wgsim already included within samtools

2015-07-08 Thread Kevin Murray
inary) package and offer my apologies for not having inspected samtools throughly. Kevin Murray -- System Information: Debian Release: stretch/sid APT prefers unstable APT policy: (500, 'unstable'), (500, 'testing'), (500, 'stable'), (500, 'oldstable'), (1