Bug#989961: picard-tools: Wrong classpath in PicardCommandLine

2021-06-17 Thread Andreas Tille
Hi Vincent, On Thu, Jun 17, 2021 at 01:04:30PM +0200, Vincent Danjean wrote: > > Not all workload are affected, but on the one where the class is needed, > the fix is required. > PicardCommandLine uses the -cp option, so the CLASSPATH envvar is > ignored. The script must be modified to fix the

Bug#989961: picard-tools: Wrong classpath in PicardCommandLine

2021-06-17 Thread Vincent Danjean
On 17/06/2021 12:23, Andreas Tille wrote: > On Wed, Jun 16, 2021 at 10:00:25PM +0200, Vincent Danjean wrote: >> The package correctly depends on libcommons-math3-java, >> but /usr/share/java/commons-math3.jar is not added in the classpath >> in /usr/bin/PicardCommandLine, leading to errors (in so

Bug#989961: picard-tools: Wrong classpath in PicardCommandLine

2021-06-17 Thread Andreas Tille
On Wed, Jun 16, 2021 at 10:00:25PM +0200, Vincent Danjean wrote: > The package correctly depends on libcommons-math3-java, > but /usr/share/java/commons-math3.jar is not added in the classpath > in /usr/bin/PicardCommandLine, leading to errors (in some situations) > such as: > [Tue Jun 15 15:59:2

Bug#989961: picard-tools: Wrong classpath in PicardCommandLine

2021-06-16 Thread Vincent Danjean
Package: picard-tools Version: 2.24.1+dfsg-1 Severity: normal Tags: patch Hi, The package correctly depends on libcommons-math3-java, but /usr/share/java/commons-math3.jar is not added in the classpath in /usr/bin/PicardCommandLine, leading to errors (in some situations) such as: [Tue Jun 15