Bug#902553: Bug#902592: [Help] Potential Cython issue with new version of h5py (Was: Bug#902592: New version does not build)

2018-06-30 Thread Tristan Seligmann
On Fri, 29 Jun 2018 at 14:40 Andreas Tille wrote: > Would you mind filing an according bug report we could refer to? > I've filed this as #902784 although I haven't had the chance to investigate the cause further. (Probably some minor packaging error)

Bug#902592: New version does not build

2018-06-30 Thread Adrian Bunk
Control: tags -1 - help On Fri, Jun 29, 2018 at 11:17:17AM +0200, Andreas Tille wrote: >... > since one of the Debian Med packages seems to be affected I tried to > upgrade h5py >... Note that the spades FTBFS is completely unrelated to this. nlopt 2.4.2+dfsg-5 moved nlopt.hpp from libnlopt-dev

Bug#902553: Bug#902592: [Help] Potential Cython issue with new version of h5py (Was: Bug#902592: New version does not build)

2018-06-29 Thread Andreas Tille
Hi Tristan, On Fri, Jun 29, 2018 at 02:26:47PM +0200, Tristan Seligmann wrote: > On Fri, 29 Jun 2018 at 14:20 Andreas Tille wrote: > > > Hi Tristan, > > > > On Fri, Jun 29, 2018 at 01:31:31PM +0200, Tristan Seligmann wrote: > > > This is a cython bug; cython-dbg fails to ship the StringIOTree ex

Bug#902553: [Help] Potential Cython issue with new version of h5py (Was: Bug#902592: New version does not build)

2018-06-29 Thread Tristan Seligmann
On Fri, 29 Jun 2018 at 14:20 Andreas Tille wrote: > Hi Tristan, > > On Fri, Jun 29, 2018 at 01:31:31PM +0200, Tristan Seligmann wrote: > > This is a cython bug; cython-dbg fails to ship the StringIOTree extension > > module, so the regular non-debug module is found when doing a debug build > > bu

Bug#902592: [Help] Potential Cython issue with new version of h5py (Was: Bug#902592: New version does not build)

2018-06-29 Thread Andreas Tille
Hi Tristan, On Fri, Jun 29, 2018 at 01:31:31PM +0200, Tristan Seligmann wrote: > This is a cython bug; cython-dbg fails to ship the StringIOTree extension > module, so the regular non-debug module is found when doing a debug build > but fails to load. Are you refering to #902551? I'd consider to

Bug#902553: [Help] Potential Cython issue with new version of h5py (Was: Bug#902592: New version does not build)

2018-06-29 Thread Tristan Seligmann
This is a cython bug; cython-dbg fails to ship the StringIOTree extension module, so the regular non-debug module is found when doing a debug build but fails to load. On Fri, 29 Jun 2018 at 13:18 Andreas Tille wrote: > Control: tags -1 help > > I agree with Ghislain that the issue below might be

Bug#902553: [Help] Potential Cython issue with new version of h5py (Was: Bug#902592: New version does not build)

2018-06-29 Thread Andreas Tille
Control: tags -1 help I agree with Ghislain that the issue below might be caused by Cython. Any idea how to fix this? Kind regards Andreas. On Fri, Jun 29, 2018 at 12:23:52PM +0200, Ghislain Vaillant wrote: > I am away right now and can't investigate before two weeks. > > Looks Cython re