On Fri, 23 Dec 2011, Charles Plessy wrote:
> here is a patch proposed by a Debian user on our bug tracker, that prevents
> samtools mpileup to crash when a read is aligned outside of the reference.
>
> Please consider including it to your next release, and do not hesitate to send
> us comments if
Dear SAM tools developers,
here is a patch proposed by a Debian user on our bug tracker, that prevents
samtools mpileup to crash when a read is aligned outside of the reference.
Please consider including it to your next release, and do not hesitate to send
us comments if there are potential probl
Package: samtools
Version: 0.1.18-1
Severity: important
Tag: patch
If a read is aligned outside of the reference (possibly due to
reference mismatch or truncation), samtools mpileup will segfault. It
should instead warn, and continue on. The attached patch fixes this.
Don Armstrong
--
"Ban cry
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