Bug#627683: libcdk-java: Cinfony does not work with Debian's CDK

2011-05-27 Thread Onkar Shinde
There are two issues here. 1. The libcdk-java package does not have correct runtime dependencies. 2. Various jar files in the package do not load appropriate third party class files by use of 'Class-Path' attribute of MANIFEST.MF file. I have figured out fixes for both of the issues and I will uplo

Bug#627683: libcdk-java: Cinfony does not work with Debian's CDK

2011-05-23 Thread Adrià Cereto Massagué
El 23 de maig de 2011 20:00, Adrià Cereto Massagué ha escrit: > It turns out that I ws missing some stuff in CLASSPATH. After adding > xom and jaxen libraries I get a different error, though: > > ssorgatem:/tmp$ python > Python 2.6.6 (r266:84292, Apr 20 2011, 09:34:38) > [GCC 4.5.2] on linux2 > Ty

Bug#627683: libcdk-java: Cinfony does not work with Debian's CDK

2011-05-23 Thread Adrià Cereto Massagué
It turns out that I ws missing some stuff in CLASSPATH. After adding xom and jaxen libraries I get a different error, though: ssorgatem:/tmp$ python Python 2.6.6 (r266:84292, Apr 20 2011, 09:34:38) [GCC 4.5.2] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> fro

Bug#627683: libcdk-java: Cinfony does not work with Debian's CDK

2011-05-23 Thread Adrià Cereto Massagué
Package: libcdk-java Version: 1:1.2.8-1 Severity: normal Cinfony (http://code.google.com/p/cinfony/) is a python wrapper which presents a common api for several chemimformatics toolkits. Only two of those toolkits are packaged for debian: OpenBabel and CDK. So I tried to use it with the debian pa